Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2368g00001 ATGGTCAGGGACGATCTATACATCACGATTCCAAGCTTCTTCCGGTGTCCTATTTCCCTCGATGTCATGAAATCTCCGGTAAGTCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGCCCGGCCACCATGCAGGTTTTGCAAACCAAAGAATTTGTTCCTAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCTGACTCGGTTCGCAACCGAGTCGAATCTGCCGATTCTCCGGCCACCAGAACAGTCCCCTCCCCGGCTCAGGTCGCCGACTCTATGAAATACTTGGACGGCCAAGGCGAGGACTGTCTCAATTCCTTAACAAGAATTGTATATTTCGCCGAAGAATCTGAAGAGAATCGGGAGTTCCTCTCGAAGTTAGAGGGGTTCGTCCCTTTACTCGTTGATTTACTCGACAATGTCAATGGCGTCGTTGAAATGCTCGAGAGAGTCGTTAATGCTTTGGATACGATTCTGGATAAAATCAAAGATCGTGAGCAGTTGAAGAAATTGATGTTGAAGAACCACGACAATTGCCTAGCTTCTCTGCTCCTTCTTCTGCAACAAGGCAGCGCCGGCTCGAAAATCGGATCGGCGAGGATTTTGAAGGTCATCGCGGTGGATGCCGAGTCCAAAGTCATGATCGCCGAAAAGGAAGGTATAATGTCCGAATTGGTCAAATCAATCTCTCCAGACAAGGACCCCGCGCTAATCGAAAACAGCCTGCTGTGTTTGATCGCAATCTCGTCGCCGAAACGGAACAAGTTGAAATTGGTCCATCTCGGAGCTATCAAGACACTTTCGCAATTACTTTCCGGCTCAAATTCGAGCACTTCCGTAACGGAAAACGTCCTGAAACTGCTGGAAACGGTATCGTCAACCAAAGAAGGTAGGTCAGAGATTAGCGAGGACCCGGCTTGTTTACCGGCTGTATTGCAAAAGGTGATGAAGGTATCGATCACCTCGACGGAGCACGCGGTGATGATACTGTGGACTGTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGCTTCACCAAATTTCTGCTCCTGATGCAGAGCAATTGTTCGCCGGCGGTTCGTCAAATGTCCGCCGATTTGCTAAAGATTTTTCGGGTCAACTCGAAATCATGCCTCTCTTGTTACGATACTAAGACCACCCACATCATGCCCTTCTGA 1236 0.4951 MVRDDLYITIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSVRNRVESADSPATRTVPSPAQVADSMKYLDGQGEDCLNSLTRIVYFAEESEENREFLSKLEGFVPLLVDLLDNVNGVVEMLERVVNALDTILDKIKDREQLKKLMLKNHDNCLASLLLLLQQGSAGSKIGSARILKVIAVDAESKVMIAEKEGIMSELVKSISPDKDPALIENSLLCLIAISSPKRNKLKLVHLGAIKTLSQLLSGSNSSTSVTENVLKLLETVSSTKEGRSEISEDPACLPAVLQKVMKVSITSTEHAVMILWTVCYLFRDQKAQEVVAMANGFTKFLLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2368g00001 411 Gene3D - 113 394 IPR011989 -
Pral2368g00001 411 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Pral2368g00001 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Pral2368g00001 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Pral2368g00001 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 318 IPR000225 GO:0005515
Pral2368g00001 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pral2368g00001 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Pral2368g00001 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Pral2368g00001 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Pral2368g00001 411 SUPERFAMILY RING/U-box 5 79 - -
Pral2368g00001 411 SUPERFAMILY ARM repeat 68 393 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2368g00001 Pral-Chr2368 8043 9611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2368g00001 1 411 U-box Gene Family AT5G64660 56.368 1.09e-153 439