Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2365g00003 ATGGAAGATGACGATGGAGCATGCAACACAGGGCTGTCTCTTGGCCTGGGAATAGGAGGGTATGTGCCGAAGAAGAAGAAGCAGATCAGAGAGAACAATCAAGTGGCGGGTCGCTGGGACCTACCCTTTGAACTTGGTCCCAAAGGAGAAGAGACCCTTAATACTAAGGATCATGAAGAACATGGATTGTTCAGAATAAAGAGAAGGGGTCATGATGACGCCAACAACTGCAGAAAGAAACTGAGGCTCACAAAGGATCAATCTGAGTTGCTGGAAGAAAGCTTCAAGCTACATACCACCCTTAACCCTGCTCAGAAGCATTCTCTTGCGGAGAAATTGAATCTCAGACCTAGACAGGTCGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAGATAGACTGCGAGTTCTTGAGGAAATGCTGCGAGAATCTGAGAGAAGAGAATCGAAGGTTGAAGAAAGAGTTGCAGGAGTTACGTGCACAGAAGATTGGGACGACGACGTCGCCGTTGTTCATTCAACTCTCAAAGACGACGGCGACGGCGGCGACGACGTGTTCGTCATGTCAGAAACCATTCAAAGCGAGTGACGCAAATAATAATAATAACAATAACAGTGGCAACCATAAATTGGAGAGAGTGGCCTTAGATTGCTACGTGGGATAA 681 0.4655 MEDDDGACNTGLSLGLGIGGYVPKKKKQIRENNQVAGRWDLPFELGPKGEETLNTKDHEEHGLFRIKRRGHDDANNCRKKLRLTKDQSELLEESFKLHTTLNPAQKHSLAEKLNLRPRQVEVWFQNRRARTKLKQTEIDCEFLRKCCENLREENRRLKKELQELRAQKIGTTTSPLFIQLSKTTATAATTCSSCQKPFKASDANNNNNNNSGNHKLERVALDCYVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2365g00003 226 Pfam Homeobox associated leucine zipper 134 167 IPR003106 GO:0006355|GO:0043565
Pral2365g00003 226 CDD homeodomain 78 135 IPR001356 GO:0003677
Pral2365g00003 226 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Pral2365g00003 226 Gene3D - 71 139 - -
Pral2365g00003 226 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Pral2365g00003 226 Coils Coil 133 167 - -
Pral2365g00003 226 SMART HOX_1 76 138 IPR001356 GO:0003677
Pral2365g00003 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 65 210 - -
Pral2365g00003 226 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Pral2365g00003 226 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Pral2365g00003 226 Pfam Homeodomain 78 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2365g00003 Pral-Chr2365 20556 21634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2365g00003 71 196 Homeobox Transcription Factor Family AT4G37790 63.281 1.70e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2365g00003 Homeodomain 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2365g00003 - K09338 pcin:129307836 315.464