Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2354g00004 ATGGTAAGAAAAAGGAGAACTGAAGTGCCTAGTGGAGGTGAAAGCTCTGAGGCGCAGCAGAGTGGGGAAACTAGTCGAGGACCTCAACAACATGTTGAAAGAAGTGCTCCATCCCCACAGCAGGCCACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCTCAAGGAGGACGGGGAGGTTATAGTGGGGGCCGGGGTCGTGGAATGCCCCAACAGCAGTACGGTGCTCCCCCTGAATATCAAGGCAGGGGGAGGGGAGGGCACTCTCAGCAATTAGGTCGTGGACGTGGTGGTGGGGGCAGTGGCCGTGGCAGTGGACCTTCTTATGGTGGCCCATCTGGACCTCAAGCTCCCGAGCTGCACCAAGCTACCCCTGTTCCACATCATGCTGGGGTGACTCCTCAAATTGCAACGTCTGAGGCCAGTTCCTCTTCCCGACAGTTTGATCCCTCACAAGTGGAACAACAAATGGGGCAGATGACAATTCATTCAGAATCTGTTTCTCCTGCCCCGCCCTCAAGCAAATCAGTGCGGTTCCCTCTTAGGCCTGGAAAGGGTAGCTATGGCACCAGGTGTATGGTTAAGGCTAACCACTTCTTTGCAGAGTTACCCAATAAAGATTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGTTGTCAATCGTGCTGTTATGGAGCAGCTGGTGAAGCTATATCGAGAGTCTCATTTGGGTAAGAGACTTCCTGTATATGATGGGCGCAAGAGCCTTTACACTGCGGGTCCTCTTCCTTTCATTTCAAAGGAGTTCAGAATCACTCTCCTTGACGAAGATGATGGATCAGGAGGGCCAAGAGAGAGGGAATTCAAAGTTGTGATAAAACTGGCTGCCCGGGCAGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATTGTGCTGCGTGAACTACCTACCACTAGGTATTGTCCTGTGGCGAGGTCATTTTATTCACCAAATCTGGGTAGGAGGCAACCATTAGGCGAGGGATTAGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGATTATCTCTCAACATCGATATGTCCTCGACTGCATTTATTGAACCATTGCCGGTAATAGATTTTGTTACTCAGTTGCTCAATCGGGATGTCTCCTCCCGCCCATTGTCTGATGCTGATCGTGTGAAGATAAAGAAAGCACTTCGAGGTGTCAGAGTTGAAGTAACTCACCGTGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACGCGAGAGCTTACGTTTCCCGTTGATGCAAGTGGAACAATGAAGTCTGTTGTTGATTATTTTTCTGAAACATATGGATTTGTCATTCAACATACCCAATGGCCTTGCTTGCAAGTGGGCAATGCGCAGAGACCAAACTATCTGCCAATGGAGGTTTGTAAGATTGTAGAAGGTCAAAGGTACTCGAAGAGGTTGAATGAAAAGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGCCCGGTTGAAAGGGAGCGTGATATTATGCAGACGGTTCATCATAATGCTTACCGTGATGATCCTTATGCCAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTAGCTCAAGTTGAAGCTCGCATCCTTCCTGCACCTTGGCTTAAATACCATGATACAGGTAGAGAAAAGGATTGTCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGGACAGTCAACCACTGGATCTGCATCAACTTTTCCAGAAATGTTCAAGACAGTGTTGCGAGTGGGTTTTGTTATGAGCTTGCTCAAATGTGTTGTATATCTGGCATGGCATTCAACTCTGAGCCAGTACTTCCCCCATGTAGTGCCCGGCCTGACTTGGTGGATAGGGTTCTGAAAACTCGGTATCATGATGCAAAAGCCAGACTGAGGGGGAAGGAGCTTGATCTTCTGATTGTTATTTTGCCCGATAATAACGGCTCTCTTTATGGTGACCTGAAACGAATAAGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACTAAGCATGTCTATAAAATGAGTAAGCAGTATCTTGCAAATGTTGCCTTGAAAATCAATGTAAAAGTAGGTGGAAGGAACACAGTGCTAGTTGATGCACTTTCACGGCGTATCCCTCTAGTCAGTGACCGACCAACAATTATTTTTGGTGCTGATGTTACTCATCCACATCCTGGAGAGGATTCAAGTCCATCCATTGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACGAAGTATGCTGGTTTGGTGTGTGCTCAAGCTCATCGACAGGAGCTCATTCAAGACCTCTTCAAACAATGGCAAGATCCAGTAAGGGGAACAGTAACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCGGAGGGCCACTGGGCAGAAGCCACAGCGCATTATATTTTATAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAGGTTCTACTGTTTGAGCTTGATGCTATCCGCAAGGCATGTGCGTCCCTGGAACCTAACTATCAGCCTCCTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACGAGGCTGTTTGCCAGCAACCATCATGACAGGAGTTTTGTTGACCGCAGTGGGAACATATTGCCTGGCACTGTTGTAGACTCTAAGATTTGTCATCCTACCGAGTTTGACTTCTATCTTTGTAGCCATGCTGGGATCCAGGGAACAAGCCGGCCAGCTCATTACCATGTGCTATGGGATGAGAACAATTTTACAGCTGATGCACTGCAATCATTGACAAACAACCTTTGTTACACTTATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCGTATTATGCTCATTTGGCTGCCTTCCGAGCTCGATTTTATATGGAACCAGAGACGTCGGAGAGTGGGTCCATGACCAGTGGTGCTGCTGCTGCACGTGGAGTTGGACCAGTGCGGGGCACTCGACTGCCTGGTGTTGCTGCTACCGTTCGGCCTCTTCCCGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTCTATTGTTAA 3147 0.4786 MVRKRRTEVPSGGESSEAQQSGETSRGPQQHVERSAPSPQQATGGGGSQGGRGWGPQGGRGGYSGGRGRGMPQQQYGAPPEYQGRGRGGHSQQLGRGRGGGGSGRGSGPSYGGPSGPQAPELHQATPVPHHAGVTPQIATSEASSSSRQFDPSQVEQQMGQMTIHSESVSPAPPSSKSVRFPLRPGKGSYGTRCMVKANHFFAELPNKDLHQYDVTITPEVTSRVVNRAVMEQLVKLYRESHLGKRLPVYDGRKSLYTAGPLPFISKEFRITLLDEDDGSGGPREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVARSFYSPNLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDASGTMKSVVDYFSETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDSVASGFCYELAQMCCISGMAFNSEPVLPPCSARPDLVDRVLKTRYHDAKARLRGKELDLLIVILPDNNGSLYGDLKRISETDLGVVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSFVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMTSGAAAARGVGPVRGTRLPGVAATVRPLPALKENVKRVMFYC 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2354g00004 1048 MobiDBLite consensus disorder prediction 137 175 - -
Pral2354g00004 1048 SUPERFAMILY Ribonuclease H-like 662 997 IPR012337 -
Pral2354g00004 1048 Pfam Glycine-rich region of argonaut 77 169 IPR024357 -
Pral2354g00004 1048 Pfam N-terminal domain of argonaute 193 326 IPR032474 -
Pral2354g00004 1048 ProSiteProfiles PAZ domain profile. 388 502 IPR003100 GO:0005515
Pral2354g00004 1048 SMART Piwi_a_2 676 997 IPR003165 GO:0003676
Pral2354g00004 1048 CDD PAZ_argonaute_like 387 501 - -
Pral2354g00004 1048 FunFam Protein argonaute-2 381 507 - -
Pral2354g00004 1048 Gene3D - 745 1048 IPR036397 GO:0003676
Pral2354g00004 1048 SMART PAZ_2_a_3 392 524 IPR003100 GO:0005515
Pral2354g00004 1048 Gene3D - 566 739 - -
Pral2354g00004 1048 FunFam Argonaute 10 566 739 - -
Pral2354g00004 1048 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 169 998 - -
Pral2354g00004 1048 FunFam protein argonaute 10-like 745 1048 - -
Pral2354g00004 1048 Pfam Argonaute linker 2 domain 528 574 IPR032472 -
Pral2354g00004 1048 Gene3D paz domain 381 506 - -
Pral2354g00004 1048 MobiDBLite consensus disorder prediction 12 47 - -
Pral2354g00004 1048 SUPERFAMILY PAZ domain 195 539 IPR036085 GO:0005515
Pral2354g00004 1048 CDD Piwi_ago-like 546 996 IPR045246 -
Pral2354g00004 1048 MobiDBLite consensus disorder prediction 1 184 - -
Pral2354g00004 1048 Pfam PAZ domain 392 518 IPR003100 GO:0005515
Pral2354g00004 1048 Pfam Piwi domain 677 996 IPR003165 GO:0003676
Pral2354g00004 1048 Pfam Argonaute linker 1 domain 337 386 IPR014811 -
Pral2354g00004 1048 SMART DUF1785_2 335 387 IPR014811 -
Pral2354g00004 1048 Pfam Mid domain of argonaute 585 658 IPR032473 -
Pral2354g00004 1048 ProSiteProfiles Piwi domain profile. 676 997 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2354g00004 Pral-Chr2354 26845 34335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2354g00004 81 1048 Eukaryotic Initiation Factors Gene Family AT1G48410 79.713 0.0 1574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2354g00004 K11593 - gmx:100780375 1758.04