Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2354g00003 ATGGTAAGAAAAAGGAGAACTGAAGTGCCTAGTGGAGGTGAAAGCTCTGAGGCGCAGCAGAGTGGGGAAACTAGTCGAGGACCTCAACAACATGTTGAAAGAAGTGCTCCATCCCCACAGCAGGCCACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCTCAAGGAGGACGGGGAGGTTATAGTGGGGGCCGGGGTCGTGGAATGCCCCAACAGCAGTACGGTGCTCCCCCTGAATATCAAGGCAGGGGGAGGGGAGGGCACTCTCAGCAATTAGGTCGTGGACGTGGTGGTGGGGGCAGTGGCCGTGGCAGTGGACCTTCTTATGGTGGCCCATCTGGACCTCAAGCTCCCGAGCTGCACCAAGCTACCCCTGTTCCACATCATGCTGGGGTGACTCCTCAAATTGCAACGTCTGAGGCCAGTTCCTCTTCCCGACAGTTTGATCCCTCACAAGTGGAACAACAAATGGGGCAGATGACAATTCATTCAGAATCTGTTTCTCCTGCCCCGCCCTCAAGCAAATCAGTGCGGTTCCCTCTTAGGCCTGGAAAGGGTAGCTATGGCACCAGGTGTATGGTTAAGGCTAACCACTTCTTTGCAGAGTTACCCAATAAAGATTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGTTGTCAATCGTGCTGTTATGGAGCAGCTGGTGAAGCTATATCGAGAGTCTCATTTGGGTAAGAGACTTCCTGTATATGATGGGCGCAAGAGCCTTTACACTGCGGGTCCTCTTCCTTTCATTTCAAAGGAGTTCAGAATCACTCTCCTTGACGAAGATGATGGATCAGGAGGGCCAAGAAGAGAGAGGGAATTCAAAGTTGTGATAAAACTGGCTGCCCGGGCAGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATTGTGCTGCGTGAACTACCTACCACTAGGTATTGTCCTGTGGCGAGGTCATTTTATTCACCAAATCTGGGTAGGAGGCAACCATTAGGCGAGGGATTAGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGATTATCTCTCAACATCGATATGTCCTCGACTGCATTTATTGAACCATTGCCGGTAATAGATTTTGTTACTCAGTTGCTCAATCGGGATGTCTCCTCCCGCCCATTGTCTGATGCTGATCGTGTGAAGATAAAGAAAGCACTTCGAGGTGTCAGAGTTGAAGTAACTCACCGTGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACGCGAGAGCTTACGTTTCCCGTTGATGCAAGTGGAACAATGAAGTCTGTTGTTGATTATTTTTCTGAAACATATGGATTTGTCATTCAACATACCCAATGGCCTTGCTTGCAAGTGGGCAATGCGCAGAGACCAAACTATCTGCCAATGGAGGTTTGTAAGATTGTAGAAGGTCAAAGGTACTCGAAGAGGTTGAATGAAAAGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGCCCGGTTGAAAGGGAGCGTGATATTATGCAGACGGTTCATCATAATGCTTACCGTGATGATCCTTATGCCAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTAGCTCAAGTTGAAGCTCGCATCCTTCCTGCACCTTGGCTTAAATACCATGATACAGGTAGAGAAAAGGATTGTCTACCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGGACAGTCAACCACTGGATCTGCATCAACTTTTCCAGAAATGTTCAAGACAGTGTTGCGAGTGGGTTTTGTTATGAGCTTGCTCAAATGTGTTGTATATCTGGCATGGCATTCAACTCTGAGCCAGTACTTCCCCCATGTAGTGCCCGGCCTGACTTGGTGGATAGGGTTCTGAAAACTCGGTATCATGATGCAAAAGCCAGACTGAGGGGGAAGGAGCTTGATCTTCTGATTGTTATTTTGCCCGATAATAACGGCTCTCTTTATGGTGACCTGAAACGAATAAGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACTAAGCATGTCTATAAAATGAGTAAGCAGTATCTTGCAAATGTTGCCTTGAAAATCAATGTAAAAGTAGGTGGAAGGAACACAGTGCTAGTTGATGCACTTTCACGGCGTATCCCTCTAGTCAGTGACCGACCAACAATTATTTTTGGTGCTGATGTTACTCATCCACATCCTGGAGAGGATTCAAGTCCATCCATTGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACGAAGTATGCTGGTTTGGTGTGTGCTCAAGCTCATCGACAGGAGCTCATTCAAGACCTCTTCAAACAATGGCAAGATCCAGTAAGGGGAACAGTAACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCGGAGGGCCACTGGGCAGAAGCCACAGCGCATTATATTTTATAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAGGTTCTACTGTTTGAGCTTGATGCTATCCGCAAGGCATGTGCGTCCCTGGAACCTAACTATCAGCCTCCTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACGAGGCTGTTTGCCAGCAACCATCATGACAGGAGTTTTGTTGACCGCAGTGGGAACATATTGCCTGGCACTGTTGTAGACTCTAAGATTTGTCATCCTACCGAGTTTGACTTCTATCTTTGTAGCCATGCTGGGATCCAGGGAACAAGCCGGCCAGCTCATTACCATGTGCTATGGGATGAGAACAATTTTACAGCTGATGCACTGCAATCATTGACAAACAACCTTTGTTACACTTATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCGTATTATGCTCATTTGGCTGCCTTCCGAGCTCGATTTTATATGGAACCAGAGACGTCGGAGAGTGGGTCCATGACCAGTGGTGCTGCTGCTGCACGTGGAGTTGGACCAGTGCGGGGCACTCGACTGCCTGGTGTTGCTGCTACCGTTCGGCCTCTTCCCGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTCTATTGTTAA 3150 0.4784 MVRKRRTEVPSGGESSEAQQSGETSRGPQQHVERSAPSPQQATGGGGSQGGRGWGPQGGRGGYSGGRGRGMPQQQYGAPPEYQGRGRGGHSQQLGRGRGGGGSGRGSGPSYGGPSGPQAPELHQATPVPHHAGVTPQIATSEASSSSRQFDPSQVEQQMGQMTIHSESVSPAPPSSKSVRFPLRPGKGSYGTRCMVKANHFFAELPNKDLHQYDVTITPEVTSRVVNRAVMEQLVKLYRESHLGKRLPVYDGRKSLYTAGPLPFISKEFRITLLDEDDGSGGPRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVARSFYSPNLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDASGTMKSVVDYFSETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDSVASGFCYELAQMCCISGMAFNSEPVLPPCSARPDLVDRVLKTRYHDAKARLRGKELDLLIVILPDNNGSLYGDLKRISETDLGVVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSFVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMTSGAAAARGVGPVRGTRLPGVAATVRPLPALKENVKRVMFYC 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2354g00003 1049 MobiDBLite consensus disorder prediction 137 175 - -
Pral2354g00003 1049 Pfam Glycine-rich region of argonaut 77 169 IPR024357 -
Pral2354g00003 1049 Gene3D paz domain 382 507 - -
Pral2354g00003 1049 FunFam Protein argonaute-2 382 508 - -
Pral2354g00003 1049 Pfam Mid domain of argonaute 586 659 IPR032473 -
Pral2354g00003 1049 SUPERFAMILY PAZ domain 195 540 IPR036085 GO:0005515
Pral2354g00003 1049 CDD Piwi_ago-like 547 997 IPR045246 -
Pral2354g00003 1049 Pfam Piwi domain 678 997 IPR003165 GO:0003676
Pral2354g00003 1049 FunFam protein argonaute 10-like 746 1049 - -
Pral2354g00003 1049 Pfam N-terminal domain of argonaute 193 327 IPR032474 -
Pral2354g00003 1049 ProSiteProfiles PAZ domain profile. 389 503 IPR003100 GO:0005515
Pral2354g00003 1049 SMART PAZ_2_a_3 393 525 IPR003100 GO:0005515
Pral2354g00003 1049 CDD PAZ_argonaute_like 388 502 - -
Pral2354g00003 1049 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 169 999 - -
Pral2354g00003 1049 Gene3D - 567 740 - -
Pral2354g00003 1049 SMART DUF1785_2 336 388 IPR014811 -
Pral2354g00003 1049 MobiDBLite consensus disorder prediction 12 47 - -
Pral2354g00003 1049 Gene3D - 746 1049 IPR036397 GO:0003676
Pral2354g00003 1049 MobiDBLite consensus disorder prediction 1 184 - -
Pral2354g00003 1049 Pfam Argonaute linker 2 domain 529 575 IPR032472 -
Pral2354g00003 1049 SUPERFAMILY Ribonuclease H-like 663 998 IPR012337 -
Pral2354g00003 1049 ProSiteProfiles Piwi domain profile. 677 998 IPR003165 GO:0003676
Pral2354g00003 1049 Pfam Argonaute linker 1 domain 338 387 IPR014811 -
Pral2354g00003 1049 Pfam PAZ domain 393 519 IPR003100 GO:0005515
Pral2354g00003 1049 SMART Piwi_a_2 677 998 IPR003165 GO:0003676
Pral2354g00003 1049 FunFam Argonaute 10 567 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2354g00003 Pral-Chr2354 26845 34335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2354g00003 81 1049 Eukaryotic Initiation Factors Gene Family AT1G48410 79.816 0.0 1581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2354g00003 K11593 - gmx:100780375 1764.59