Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2354g00002 ATGGAAATGCAGGACCATATAGAAGGAATAAAGTTGAATAGCTCTGGCAATGCTAGCAATAACCATTACAACAATGGCACAAAATCTGGAAATGTTGACCTATTGAATGATCAAACTCCTAATGGAAACAGCCATCCTCCTAAGGTGAGGAAACCATATACCATTTCCAAGCAAAGAGAAAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTGGAGGCTTTGAAATTGTATGGTCGTGGTTGGCGACAAATTGAAGAACACATAGGTACAAAGACTGCAGTTCAGATTCGAAGCCATGCCCAGAAGTTCTTCTCTAAGGTTGCCCGGGAATCTGATGGCGCTTCTGAAAGTCCTATAAAACCAAGTGATATACCTCCTCCTCGGCCAAAGAGGAAACCCCTACATCCATATCCCCGTAAATCAGTTGACTCTGGCAAAAGACTGTCCATTGCAAATGAAGCGCAAAGATCCCAATCCCCAAACCTGGCAGTTGCAGAGAAAGACACCCAGTCTCCGACCTCGGTCCTATCTGCATCTAATTCAGAAGTGTTTGGATCAGCATCCCCAGAGCAGCCTAACAGATGTCAATCACCTAATTCTTGTGCCACTGATGTCCACTCATCCAACTTATCACCATCACCCGTTGAAAAGGAAAATGATTGCATGACATTTGACTCTTCTGTGGAGGAAGAGAAGGGATCTCTTGCTTCACTCTCTTTATCTGCTGGTTTGAACTTAAATGTGCTGTCAACGAAGTCTGAGTTGAGTTCCAAGGATATTGAATCTTCTATTGAAGATGCTACCAACGTGGCCCATATTACAAGTATTAAGCTGTTTGGAAGAACTATTCAGATGGTAGATAATCAGAAGTTACTTGATGTAGATGGGGAGAATATCAAGGCAATTGCAAGCAAGTCTGATCATGTAGATGACGTTGAGAACGAAAAGCTTGGCCAATCGTGGGCGATCCAGCCAACTAGATTAACAACTATCACGAGACAGGATGACAGAGAAGGACACTTCCTGTACTGGTTCGAATGCTGGAACTGGCTGTGA 1056 0.4366 MEMQDHIEGIKLNSSGNASNNHYNNGTKSGNVDLLNDQTPNGNSHPPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVARESDGASESPIKPSDIPPPRPKRKPLHPYPRKSVDSGKRLSIANEAQRSQSPNLAVAEKDTQSPTSVLSASNSEVFGSASPEQPNRCQSPNSCATDVHSSNLSPSPVEKENDCMTFDSSVEEEKGSLASLSLSAGLNLNVLSTKSELSSKDIESSIEDATNVAHITSIKLFGRTIQMVDNQKLLDVDGENIKAIASKSDHVDDVENEKLGQSWAIQPTRLTTITRQDDREGHFLYWFECWNWL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2354g00002 351 CDD SANT 61 104 IPR001005 -
Pral2354g00002 351 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Pral2354g00002 351 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Pral2354g00002 351 SMART sant 58 106 IPR001005 -
Pral2354g00002 351 MobiDBLite consensus disorder prediction 1 54 - -
Pral2354g00002 351 SUPERFAMILY Homeodomain-like 53 108 IPR009057 -
Pral2354g00002 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Pral2354g00002 351 PANTHER SWI/SNF COMPLEX-RELATED 30 286 - -
Pral2354g00002 351 MobiDBLite consensus disorder prediction 148 216 - -
Pral2354g00002 351 MobiDBLite consensus disorder prediction 125 142 - -
Pral2354g00002 351 MobiDBLite consensus disorder prediction 106 220 - -
Pral2354g00002 351 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Pral2354g00002 351 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Pral2354g00002 351 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Pral2354g00002 351 Gene3D - 61 108 - -
Pral2354g00002 351 MobiDBLite consensus disorder prediction 10 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2354g00002 Pral-Chr2354 7730 11267 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral2354g00002 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2354g00002 - - vum:124836796 353.214