Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2350g00003 ATGGCTCCCCGAGACCCACCCATCTCCCTTGCTGCACCCACCGACCCCACTCTCTCCGCCAAAGAGATTCGCTATCGCGGCGTCAGGAAGAGGCCTTGGGGCCGTTACGCCGCCGAGATCCGGGACCCCGGTAAGAAAACCCGGGTTTGGCTTGGCACTTTTGACACCGCTGAGGAGGCGGCGCGTGCCTACGACAAAGCTGCGCGGGACTTCCGTGGAGCCAAGGCCAAGACCAATTTCCCCACTCCTTCTGAGCTTGTAAATAACACCAACAACTCCACCCGCAGTCCTAGCCAGAGCAGCACCCTGGATTCTTCGTCTCCGCCGCCGTTAGACCTTAGCCTCACGCCTCTTTGTACCGGCATCGGTGCTGCGGGCTTTCCCCTCATCCCCGTGGCTCGTCCCGTTGTGTTCTTCGACGCGTTTGCGAGGGCTGACAACATGAAAAGCGTTGGCCGCCGCGAGATGTGCGGGTTTGACCGCCCGGTGACCGATTTACGTCCCGACGCCGGTAGTGCGCAGAGTGACTCCGACTCGTCGTCTGTTGTGGACTATGTGCGTGCTCCCCAGCCCCGGAGGCTTCTGGATCTCGATCTTAACCTTGCTCCTCCGGCGGAAGTTGCTTGA 627 0.6124 MAPRDPPISLAAPTDPTLSAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAARDFRGAKAKTNFPTPSELVNNTNNSTRSPSQSSTLDSSSPPPLDLSLTPLCTGIGAAGFPLIPVARPVVFFDAFARADNMKSVGRREMCGFDRPVTDLRPDAGSAQSDSDSSSVVDYVRAPQPRRLLDLDLNLAPPAEVA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2350g00003 208 MobiDBLite consensus disorder prediction 170 184 - -
Pral2350g00003 208 MobiDBLite consensus disorder prediction 75 110 - -
Pral2350g00003 208 MobiDBLite consensus disorder prediction 161 184 - -
Pral2350g00003 208 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pral2350g00003 208 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Pral2350g00003 208 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Pral2350g00003 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pral2350g00003 208 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pral2350g00003 208 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Pral2350g00003 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 188 - -
Pral2350g00003 208 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Pral2350g00003 208 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Pral2350g00003 208 MobiDBLite consensus disorder prediction 81 110 - -
Pral2350g00003 208 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2350g00003 Pral-Chr2350 12200 13387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2350g00003 19 155 AP2-EREBP Transcription Factor Family AT3G15210 60.784 3.41e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2350g00003 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2350g00003 K09286 - qsa:O6P43_029132 198.364