Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2348g00004 ATGGGACATAGACATTTATATAGCATGTCCCAGATGTTTGGGAGTGAGCAGGAGCAGAATTGGAATTATATGCACACTGATCAACATAATGGTAGGGGTAGCGCTTCAGAGAATGGTTCTTTTATTTATCCACTAGAAAATATGCCTATAGATGGCAGCTCTTTGGCCGCTTCTTGGAACAATGCCGCGATGTCAAATGGATATGCATCCTCAAGTATCAACATTGAATTACCCCCTCGTCAATCAGATGCATCAAGATCTTCTCATGATCATTATTTACGTTCATCAAATCCTGGAGCTTTTTTCGCAGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAATTGTGATAGACAAGCATTTCATGTTGCTGATGGTGATTTCTTTGATTTCACCATGGGGAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTTTGTGAGAGAGGCAGTACAAGCAGATATTTCAGTGCAGGAAGCTCAACTGATCTCCCTATATCTTCAGAAATAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATTTCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACGCATTTATCTGGCAACCATTTGCACAACTCATCTTCTGGCCCGTCCAATGATCATTCTAGCTCTGTGGGTCTTTCTGGTCATAGTTCTAATACTGTGCCAAGGGACTGGAGCCAAATGAACATGTCTCCGGCTCCTGGGAGGGTATTATTATCTGAATCAAGTGGATATAATCATGAGCCAAGTCGCTTGCTGGTTGGAAGTGGTGTTAGTAATGCTTCGGTAGACGCTGGGAGTTACCATCATGAATATGATACAAGCATAAATCCTATTGTTCCTCAAAGTTTTCACAGTAATCTCACTCACCCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCATGCGTGGGACATATGATGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTAATCTCTAGACATCCAAGGCCATTGACTGCCATCAGTTCGCGGAATACTGATAGAAACGGGAGGTCAAGGATATCTAGCGAGAGATATCGAACATTAGCTGATGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGATCGTGCGCCGCTTTATGGTTCTCGAAATATGATTGATCAACATAGGGACATGAGGATGGACATAGACAATATGAGTTATGAGGAACTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGAAGTTGATTTCCAAGTGTTTGACAGAATCAATATATTGTTCGTCCGAGCAGAGTCAAGAGGAAGGAAGTTGTGTGATCTGCTTGGAAGATTACAAGTACATGGACGATGTTGGGACAATGAGAGGTTGCGGCCATGACTATCATGTGAGCTGCATTAGAAAATGGTTATCTATGAAGAACATATGTCCTATCTGCAAAGCTTCTGCTCTTCCTGATGAGATGAAGGATAAATAA 1647 0.4347 MGHRHLYSMSQMFGSEQEQNWNYMHTDQHNGRGSASENGSFIYPLENMPIDGSSLAASWNNAAMSNGYASSSINIELPPRQSDASRSSHDHYLRSSNPGAFFAVSENYAHQPSSNCDRQAFHVADGDFFDFTMGSGRGPHKRKSPGIPSVCERGSTSRYFSAGSSTDLPISSEIRQEKPSLDSQFLPWDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLESNLARTHLSGNHLHNSSSGPSNDHSSSVGLSGHSSNTVPRDWSQMNMSPAPGRVLLSESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYDTSINPIVPQSFHSNLTHPARGVRSNYSQRSTPTPTPTFRASSSSCVGHMMPSDGGLHMGAEGLISRHPRPLTAISSRNTDRNGRSRISSERYRTLADEAILHDRFSSEGFMVVDRAPLYGSRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEKLISKCLTESIYCSSEQSQEEGSCVICLEDYKYMDDVGTMRGCGHDYHVSCIRKWLSMKNICPICKASALPDEMKDK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2348g00004 548 SMART ring_2 495 536 IPR001841 -
Pral2348g00004 548 MobiDBLite consensus disorder prediction 330 357 - -
Pral2348g00004 548 CDD RING-H2_RNF24-like 495 540 - -
Pral2348g00004 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Pral2348g00004 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 137 541 IPR045191 GO:0061630
Pral2348g00004 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Pral2348g00004 548 Pfam Ring finger domain 494 537 IPR001841 -
Pral2348g00004 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Pral2348g00004 548 SUPERFAMILY RING/U-box 485 541 - -
Pral2348g00004 548 MobiDBLite consensus disorder prediction 231 282 - -
Pral2348g00004 548 MobiDBLite consensus disorder prediction 231 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2348g00004 Pral-Chr2348 28254 35116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2348g00004 1 547 C3H Transcription Factor Family AT2G37150 41.815 3.81e-105 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2348g00004 - - qsa:O6P43_006681 760.37