Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2345g00001 ATGACAGGCTCGCCCAGAAAAGTTCTAAAGCCCCAACGAGAAAGAGCAAAGAAGTCGAACTTTATGAGAAGAGTTCGAATCACATTCACAGACCCATATGCTACGGATTGTTCAAGCGAAGAAGAGGGTGAATCTGTGATGATCAATGGCTGCAAGCGATTCGTGAAGGAGATTCTTGTTCCTATCAGATCATGCGGAGGAAACCTGAAAGCGGGTCCCAGTTCTGCCACCAGCACCAGCCGGAGGAAGCGGAAATCGTCAGGCTTACCGAGAGGGGTGCGACGTCGTAAATGGGGGACATACGTTGCGGAGATCCGGGACCCATTTCGAAGGGTCCGAATGTGGCTGGGAACATACAATACTGTGGAAGAAGCTTCTTTGGCTTATGAGGAGAAGAGGAAGGAATTTGAAAGCTTGCTGTCCCGTCCATCTCCATCATCTGTGCTTGACGTCACTTCTAATAATAATAATAATAATAATTCAATGGGTAGTGATGAGAGTGATGGTTCTGTGAATGTAGAACAGTATTATGAAGAAGAAGGGTACATTCAGCACTTGTTAGAGGAGCCAATTGTGCCATTACTGGAGGTTAGAGGAATGGTGTTTGGTGGTGAATCTGACAATAATTTGGACGTTAATGATAATAATGATGATGATGGTGCTAATGGAGGTTTGATCTGCGATGATAATAAGGAGGAAGCAGAAGAAGAAGAGGGTGAAGGGAGAACAGGTGTTCAGTCTGCTGGGAGTGATTCTAGTGATAATGTAGAGTTAGATTGGATTGATGAAGCTCTCAATGATGATGAATGGCCTTGGGAATGA 822 0.4489 MTGSPRKVLKPQRERAKKSNFMRRVRITFTDPYATDCSSEEEGESVMINGCKRFVKEILVPIRSCGGNLKAGPSSATSTSRRKRKSSGLPRGVRRRKWGTYVAEIRDPFRRVRMWLGTYNTVEEASLAYEEKRKEFESLLSRPSPSSVLDVTSNNNNNNNSMGSDESDGSVNVEQYYEEEGYIQHLLEEPIVPLLEVRGMVFGGESDNNLDVNDNNDDDGANGGLICDDNKEEAEEEEGEGRTGVQSAGSDSSDNVELDWIDEALNDDEWPWE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2345g00001 273 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 136 - -
Pral2345g00001 273 MobiDBLite consensus disorder prediction 140 170 - -
Pral2345g00001 273 MobiDBLite consensus disorder prediction 207 273 - -
Pral2345g00001 273 SMART rav1_2 91 158 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 MobiDBLite consensus disorder prediction 69 92 - -
Pral2345g00001 273 CDD AP2 91 131 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 Gene3D AP2/ERF domain 91 139 IPR036955 GO:0003700|GO:0006355
Pral2345g00001 273 Pfam AP2 domain 91 137 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 Coils Coil 122 142 - -
Pral2345g00001 273 ProSiteProfiles AP2/ERF domain profile. 89 152 IPR001471 GO:0003700|GO:0006355
Pral2345g00001 273 MobiDBLite consensus disorder prediction 256 273 - -
Pral2345g00001 273 SUPERFAMILY DNA-binding domain 90 136 IPR016177 GO:0003677
Pral2345g00001 273 MobiDBLite consensus disorder prediction 139 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2345g00001 Pral-Chr2345 21952 22773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2345g00001 22 158 AP2-EREBP Transcription Factor Family AT1G68550 37.500 9.17e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2345g00001 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2345g00001 - - lang:109357920 148.288