Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2338g00004 ATGGGTTCAAAACCTCTAATCGATTTCGAGAATGTTAGTGGAAGCACAGTCACAGAATTGCCATTCTTCCAAGGTCTGGACAAAGAAGAGAACACAGAAGAGGAATACGATGCGTGCTTTCATCAACCAGGGAAGAAGAGGAGGCTCACAAGCCAACAAGTACAGTTCCTTGAGAAGAACTTCGAGTTAGAAAACAAGCTGGAACCAGAAAGAAAAGTTCAACTCGCTAAAGAACTGGGGTTGCAGCCAAGGCAAGTCGCTATCTGGTTTCAGAACAGAAGAGCTCGGTTCAAAACCAAACAGCTCGAAAAAGACTATATAACCTTAAAATCTAGCTATGACAAACTCAAAGGTGACCATGACACTCTCCTTCACCAGAATGAGGAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAGGTTGATCGGGAGAGATGATAAAGAGAAAGAAGAGAATTATGAGAAGTGTGTTGATGTTTTGATGATCTCAAATAATAATAATAATAATGGGGCTTCTTCTGAAGATGGGTCAAAAGTTGAAAAGGTTCCAACAGTAATATGCAAACAAGAAGATGCCAATTCTGCTAAAAGTGATGTGTTTGATTCAGATAGCCCACACCACACTGCAGATTCCTCCCATGCCTACGAAGCAGAGCACTCAGATTTCTCACAGGACGAAGAAGACAACCTGATGAGTCATAACCTCGTGAATCTCCCACCGTGCTTACCAAAGGTTGAAGAAGAGCCCTGTAACTTCGGATTCCCATATGAAGATCAACCCTTCTGTTTTTGGTCTTATTAA 801 0.4157 MGSKPLIDFENVSGSTVTELPFFQGLDKEENTEEEYDACFHQPGKKRRLTSQQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYITLKSSYDKLKGDHDTLLHQNEELKEEVNSLKNRLIGRDDKEKEENYEKCVDVLMISNNNNNNGASSEDGSKVEKVPTVICKQEDANSAKSDVFDSDSPHHTADSSHAYEAEHSDFSQDEEDNLMSHNLVNLPPCLPKVEEEPCNFGFPYEDQPFCFWSY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2338g00004 266 MobiDBLite consensus disorder prediction 193 226 - -
Pral2338g00004 266 SUPERFAMILY Homeodomain-like 36 102 IPR009057 -
Pral2338g00004 266 Gene3D - 38 105 - -
Pral2338g00004 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 201 IPR045224 GO:0003700
Pral2338g00004 266 CDD homeodomain 43 101 IPR001356 GO:0003677
Pral2338g00004 266 MobiDBLite consensus disorder prediction 194 226 - -
Pral2338g00004 266 SMART HOX_1 42 104 IPR001356 GO:0003677
Pral2338g00004 266 Coils Coil 113 147 - -
Pral2338g00004 266 FunFam homeobox-leucine zipper protein ATHB-6-like 48 94 - -
Pral2338g00004 266 Pfam Homeodomain 45 98 IPR001356 GO:0003677
Pral2338g00004 266 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Pral2338g00004 266 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Pral2338g00004 266 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Pral2338g00004 266 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Pral2338g00004 266 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2338g00004 Pral-Chr2338 39586 41273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2338g00004 2 150 Homeobox Transcription Factor Family AT3G01470 50.336 2.71e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2338g00004 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2338g00004 K09338 - gmx:547565 306.219