Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2338g00003 ATGGCTGGTCCTAACAGGCTTTTTGCTTCCTCAAATCTCACAGCTTTTCTTCAGAACGAAAGCCTTCCTTCTTCTTCTCATGTTCTTGACCCTTTCTTGCTTCACCACTCTGACCCTTCCTTTCAAGGTTCAAAACCTCTAATCGATTTCGAGAATGTTAGTGGAAGCACAGTCACAGAATTGCCATTCTTCCAAGGTCTGGACAAAGAAGAGAACACAGAAGAGGAATACGATGCGTGCTTTCATCAACCAGGGAAGAAGAGGAGGCTCACAAGCCAACAAGTACAGTTCCTTGAGAAGAACTTCGAGTTAGAAAACAAGCTGGAACCAGAAAGAAAAGTTCAACTCGCTAAAGAACTGGGGTTGCAGCCAAGGCAAGTCGCTATCTGGTTTCAGAACAGAAGAGCTCGGTTCAAAACCAAACAGCTCGAAAAAGACTATATAACCTTAAAATCTAGCTATGACAAACTCAAAGGTGACCATGACACTCTCCTTCACCAGAATGAGGAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAGGTTGATCGGGAGAGATGATAAAGAGAAAGAAGAGAATTATGAGAAGTGTGTTGATGTTTTGATGATCTCAAATAATAATAATAATAATGGGGCTTCTTCTGAAGATGGGTCAAAAGTTGAAAAGGTTCCAACAGTAATATGCAAACAAGAAGATGCCAATTCTGCTAAAAGTGATGTGTTTGATTCAGATAGCCCACACCACACTGCAGATTCCTCCCATGCCTACGAAGCAGAGCACTCAGATTTCTCACAGGACGAAGAAGACAACCTGATGAGTCATAACCTCGTGAATCTCCCACCGTGCTTACCAAAGGTTGAAGAAGAGCCCTGTAACTTCGGATTCCCATATGAAGATCAACCCTTCTGTTTTTGGTCTTATTAA 924 0.4199 MAGPNRLFASSNLTAFLQNESLPSSSHVLDPFLLHHSDPSFQGSKPLIDFENVSGSTVTELPFFQGLDKEENTEEEYDACFHQPGKKRRLTSQQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYITLKSSYDKLKGDHDTLLHQNEELKEEVNSLKNRLIGRDDKEKEENYEKCVDVLMISNNNNNNGASSEDGSKVEKVPTVICKQEDANSAKSDVFDSDSPHHTADSSHAYEAEHSDFSQDEEDNLMSHNLVNLPPCLPKVEEEPCNFGFPYEDQPFCFWSY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2338g00003 307 CDD homeodomain 84 142 IPR001356 GO:0003677
Pral2338g00003 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 242 IPR045224 GO:0003700
Pral2338g00003 307 FunFam homeobox-leucine zipper protein ATHB-6-like 89 135 - -
Pral2338g00003 307 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Pral2338g00003 307 MobiDBLite consensus disorder prediction 235 267 - -
Pral2338g00003 307 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pral2338g00003 307 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Pral2338g00003 307 Coils Coil 154 188 - -
Pral2338g00003 307 Gene3D - 79 146 - -
Pral2338g00003 307 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Pral2338g00003 307 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Pral2338g00003 307 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Pral2338g00003 307 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Pral2338g00003 307 SMART HOX_1 83 145 IPR001356 GO:0003677
Pral2338g00003 307 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2338g00003 Pral-Chr2338 39586 41273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2338g00003 23 191 Homeobox Transcription Factor Family AT3G01470 48.538 8.28e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2338g00003 Homeodomain 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2338g00003 - K09338 qsu:112000549 338.961