Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2337g00008 ATGACCAGGAACAAAGTGCCTCTTGCATATCTCCCGAGCGACGCTGCAAGGAAGACAACATATAAGAAAAGGATGAAGGGTCTTGCGAAAAAGGTGAGTGAATTAACCATTCTTTGTGGGATTGAAGCATGTGCCATTGTTTTTAGCCCCTATGAATCTAATCCAAAAGTTTGGCCAAATTCAAGAGGAGCCCAGCAGGTAATCGCAAGGTTCCAAAATGCACCTGCGCCGGATGAAAAAAGGAATTTGAACCAGGAGAGTTTTGCTAGGCAAAGGATTGCCAAAATTAATGCACAACTTGAGAAGCAGCGTGAAGAGAATTGCAAGAAGGTGACAAAGCTAGCTGTATTCCAGTGTGCTGAAGGGAAGAGTATGGGTGACGAGATGATCGTGGATCTTGATGACATTGATCGCTTGACCCAGGAGAACATAAGCAAGATTAAGAATAAGATGGATGAGTTTATTTGA 468 0.4316 MTRNKVPLAYLPSDAARKTTYKKRMKGLAKKVSELTILCGIEACAIVFSPYESNPKVWPNSRGAQQVIARFQNAPAPDEKRNLNQESFARQRIAKINAQLEKQREENCKKVTKLAVFQCAEGKSMGDEMIVDLDDIDRLTQENISKIKNKMDEFI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2337g00008 155 PANTHER MADS BOX PROTEIN 3 151 - -
Pral2337g00008 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral2337g00008 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 51 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2337g00008 155 Coils Coil 86 106 - -
Pral2337g00008 155 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Pral2337g00008 155 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pral2337g00008 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2337g00008 Pral-Chr2337 37305 37772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2337g00008 1 152 Type I MADS-box Gene Family AT5G48670 43.506 3.85e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral2337g00008 SRF-TF 4.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2337g00008 - - aew:130779265 163.31