Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2336g00007 ATGGCTTCCGATCTCGAAGCTAAAGCCAAAGAGGCTTTCGTCGATGACCACTACGAGCTGGCCGCGGACCTTCTGACTGAGGCCATCGCCCTCAGCCCTAGCGCCGAGCTCTATGCCGACCGTGCCCAGGCTAACATCAAACTCAGCAACTACACTGAAGCTGTTGCTGACGCAAACAAGGCAATTGACTTGAATCCGGAGCTAGCAAAAGCATATTTGCGCAAAGGTACTGCGTGCATGAAGCTTGAGGAATATCAGACCGCAAAGGCAGCTCTGATGAAGGGTGCTTCACTGGATCAGGGAGATTCAAGATTCATTACTTTGATCAAAGAGTGTGATGATCTTATTGCAGAGGAAAGTAGCACAATAACTATACAGGAAAAGAGCCCTATTTCTGATGCTGCTTCAAAAAATGTAAAGCCAGAGAACGACCTTGCCTTAAATCCAGAGAATGACCTTTCAAAGCAGGTGGCAGAACCAGCAGCTAAGCCTAAGTACAGGCATGAATTTTACCAGAAGCCTGATGAGGTTGTTGTAACCATATTTGCCAAGGGAATCCCTCAGGATAGCGTTACTGTTGACTTTGGTGAACAAATACTAAGTGTTCGTATTGATGTTCCTGGTGAAGATGGATATACTTTTCAACCCCGCTTATTTGGAAAGATTACGCCTGCAAGAAGCAGATATGAGGTATTGTCTACCAAAATTGAAATTCGCCTTGCAAAAGCAGAACCTTTACATTGGACTTCTCTTGAATTCACTGGGCAAATTACAGTTCAAAGAAAGGTCACTGCTCCCTCAGGTCCAAGACCTACGTACCCGTCCTCAAAACCAACAAGAGTAGATTGGGATAAACTGGAAGCTCAGGTTAAGAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCGGCGCTGAACAAATTTTTCCGTGAAATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGGAAGTCATTTGTGGAATCTAATGGAACGGTACTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCCCCGGATGGCATGGAGCTGAAAAAATGGGAATATTAA 1092 0.4478 MASDLEAKAKEAFVDDHYELAADLLTEAIALSPSAELYADRAQANIKLSNYTEAVADANKAIDLNPELAKAYLRKGTACMKLEEYQTAKAALMKGASLDQGDSRFITLIKECDDLIAEESSTITIQEKSPISDAASKNVKPENDLALNPENDLSKQVAEPAAKPKYRHEFYQKPDEVVVTIFAKGIPQDSVTVDFGEQILSVRIDVPGEDGYTFQPRLFGKITPARSRYEVLSTKIEIRLAKAEPLHWTSLEFTGQITVQRKVTAPSGPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2336g00007 363 ProSiteProfiles CS domain profile. 163 252 IPR007052 -
Pral2336g00007 363 Gene3D - 164 254 IPR008978 -
Pral2336g00007 363 SMART tpr_5 35 68 IPR019734 GO:0005515
Pral2336g00007 363 SMART tpr_5 69 102 IPR019734 GO:0005515
Pral2336g00007 363 MobiDBLite consensus disorder prediction 132 157 - -
Pral2336g00007 363 Coils Coil 41 61 - -
Pral2336g00007 363 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Pral2336g00007 363 ProSiteProfiles SGS domain profile. 272 363 IPR007699 -
Pral2336g00007 363 FunFam Protein SGT1 homolog A 161 265 - -
Pral2336g00007 363 CDD p23_CS_SGT1_like 169 252 - -
Pral2336g00007 363 Pfam Tetratricopeptide repeat 69 100 IPR019734 GO:0005515
Pral2336g00007 363 Pfam Tetratricopeptide repeat 35 67 IPR019734 GO:0005515
Pral2336g00007 363 Gene3D Tetratricopeptide repeat domain 1 128 IPR011990 GO:0005515
Pral2336g00007 363 Pfam CS domain 167 242 IPR007052 -
Pral2336g00007 363 SUPERFAMILY TPR-like 3 112 IPR011990 GO:0005515
Pral2336g00007 363 ProSiteProfiles TPR repeat profile. 35 68 IPR019734 GO:0005515
Pral2336g00007 363 SUPERFAMILY HSP20-like chaperones 162 258 IPR008978 -
Pral2336g00007 363 Pfam SGS domain 282 361 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2336g00007 Pral-Chr2336 71180 75526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2336g00007 1 166 U-box Gene Family AT3G07370 27.059 3.29e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2336g00007 K12795 - gmx:100780174 523.087