Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2335g00047 ATGACTGATTTGGAAATGGATCGACGAAGGCAAGACTATTATCATTCTGAACCCTGTATTATTCTGAGGGGGCCCAACATCTCACAGCCAAATATCCGCTCAATGGTGGCAGCTTCAGGAAGCACTAGTAATATTGATTCCCACTATTCGTCAGATGCTTATGACAACGGTTTGCTGTATGGGATGACACAGTTTAATGGGGTTCATCATCTACCCAATCCTGATGTTGGTGCCGCTGCATGTTCTAGCTTGTTTTATTCTGCAATTAATCCCGCCTCTGGTGCTGGTGTAGTACCTCAGCCCATTAATTACCGAGCAACTGATCAATTGCCAGCTCCAGGCACATATGCTGTCTCTGGAATTTTTATGGATGATGCAAGATGCCCATACAAACTAAAAGTTATTGAGGGCATCAGAGGAAACTACCAACATTTTAATGCTGCAGCTAGTTCTTCAGTAGCTCCTCCAAATGCAAGGCACTCTGATGGGGTTCCTGTATCATTTTCTTTACCTCAATTTAGAGGAAATCACGTTCCATCACTTGTAGAAATTGGACCTCATGGTAGTGTGTGGAGTAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTAATTCAAGGAAACTACTTGGGCCAGCATTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAACGGTACTAACAGTGAAGGACATAATATGGCCTGGAATCAGTCCCATTCAATACCTCATATGCAAGCAGCTGTTAATGGAAGTTCATTAGAAAATGCAAATACAGGTATGCAGAGATATCATGATGCAGCTAGCAACAGAAGCAGCCTCAGGTTTGCTCATCCTCCTCCTGTTAACCACCAGCACCATAATTATCAACTTCCAACTCTGCCTATGCAAGGAGTAAGGGGCCACAATATCAACTTTCACCCTCCAGTTACTGCAACTGCTTACAGAGGGGTTCCGTCAAATTCTCCGCACAGTACCATTATCCCAATGCAGAATGGTTTTGGGTTGGGTGCTAGGCACGTTGGCCCTGCAACATCAGCAAGCCAACGGGCACATCGTTCTCATAGAGGAGTCGTGCAGGATACATCTCTTAGACATCACAATTCCCGTCCAGTGAGTTTTCTCCATGTTGATGATGTTGCTTTGCTTGATGGCGTGGAAAATTTAGTTGACCATCATCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGGATTGGCAATGTGAGCACGGGTTTATCAGAGGAAACCATTACCACTCAATTGAAAACAAAAACTTTCGAGTCCTCTGCCGCTAATCCGGAGGAAGCAGCTTCTGAGGATGAAGAAACCGATTCTTGCATCATATGCCTGGACGAATATAAGAACCAAGAGACAGTGGGAATTCTCGACTGTGGGCACGAGTATCATGCCGTTTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCCATATGCAAATCAGAGGCATTGACTCCTAAAAGGAAGGACGTATAA 1542 0.4494 MTDLEMDRRRQDYYHSEPCIILRGPNISQPNIRSMVAASGSTSNIDSHYSSDAYDNGLLYGMTQFNGVHHLPNPDVGAAACSSLFYSAINPASGAGVVPQPINYRATDQLPAPGTYAVSGIFMDDARCPYKLKVIEGIRGNYQHFNAAASSSVAPPNARHSDGVPVSFSLPQFRGNHVPSLVEIGPHGSVWSRSGDSVMVHEHNHLIQGNYLGQHFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSIPHMQAAVNGSSLENANTGMQRYHDAASNRSSLRFAHPPPVNHQHHNYQLPTLPMQGVRGHNINFHPPVTATAYRGVPSNSPHSTIIPMQNGFGLGARHVGPATSASQRAHRSHRGVVQDTSLRHHNSRPVSFLHVDDVALLDGVENLVDHHHGDMRLDIEDMSYEELLALGERIGNVSTGLSEETITTQLKTKTFESSAANPEEAASEDEETDSCIICLDEYKNQETVGILDCGHEYHAVCLKKWLLLKNVCPICKSEALTPKRKDV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2335g00047 513 SUPERFAMILY RING/U-box 455 507 - -
Pral2335g00047 513 ProSiteProfiles Zinc finger RING-type profile. 461 502 IPR001841 -
Pral2335g00047 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 506 IPR013083 -
Pral2335g00047 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 131 506 IPR045191 GO:0061630
Pral2335g00047 513 Pfam Ring finger domain 459 502 IPR001841 -
Pral2335g00047 513 CDD RING-H2_RNF24-like 459 505 - -
Pral2335g00047 513 SMART ring_2 461 501 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2335g00047 Pral-Chr2335 256921 260530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2335g00047 343 506 C3H Transcription Factor Family AT2G15530 41.071 3.78e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2335g00047 K19041 - qsa:O6P43_001011 567