Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2331g00012 ATGCCTCGTCTCGCAGCTTGCTTTCTTCTTCTTTTCTCTCTCCCTCTCATTGTTTCCTGCGTCGCAGTTCAAGACCCTGAGCTAGTTGTACAAGACGTGCACAGAAGAATCAATGCCTCTAGAAGAAATTTGGGGTATTTATCATGTGGCACCGGCAACCCCATCGACGACTGCTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTAGCCGACTGCGCCATCGGGTTCGGCAAGGACGCCATGGGAGGAAGAAACGGTCGAGTCTATGTGGTGACAGACTCCGGCGACGACGACCCGGTGAACCCTAAGCCGGGAACTCTGAGACACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACCCTAAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGACGGAAGGGGAGCGAGTGTTCACATTGCAGGCGGCGGATGCATAACGATACATTACGTTAGCAACATTATCATTCACGGCATTCACGTTCATGATTGTAAGCCCACCGGGCACGCCGATATCAGAGACTCTCCTCGCCACTATGGGTGGTGGACGGTGTCCGACGGCGACGGAATCTCCATATTTAATTCCAGGCATATCTGGGTGGACCACTGCTCGCTCTCTAATTGCCGCGACGGGCTCATTGACGCAATCCATGGATCCACAGCCATCACTATCTCCAACAACTACATGACCCACCATGATAAAGTCATGCTCTTAGGCCACAGTGATTCTTACACTCAGGACAAGGACATGCAGGTCACTATCGCCTTCAATCACTTCGGAGAAGGCCTCGTGCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATAGGTGGGAGTGCGAATCCTACCATAAACAGCCAGGGGAATAGGTTTCTGGCACCAGATAACAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCCGCAGAAGGAGAGTGGATGAACTGGAACTGGAGATCAGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCAGGCAATCTGGTGCCGGCGCTTCTTCAAGCTACGCTAGGGCTTCAAGTCTCAGCGCCAGACCTTCTTCTCTTGTTGGCTCCATGACCATGACTGCTGGTGTACTCACATGCAGGAAGGGCATGAGTTGCTGA 1206 0.5191 MPRLAACFLLLFSLPLIVSCVAVQDPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAMGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHVHDCKPTGHADIRDSPRHYGWWTVSDGDGISIFNSRHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAAEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTMTAGVLTCRKGMSC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2331g00012 401 Pfam Pectate lyase 133 318 IPR002022 -
Pral2331g00012 401 Gene3D - 52 394 IPR012334 -
Pral2331g00012 401 SMART amb_all 127 324 IPR002022 -
Pral2331g00012 401 PANTHER PECTATE LYASE 18-RELATED 24 398 IPR045032 GO:0030570
Pral2331g00012 401 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Pral2331g00012 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Pral2331g00012 401 FunFam Pectate lyase 52 394 - -
Pral2331g00012 401 SUPERFAMILY Pectin lyase-like 34 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2331g00012 Pral-Chr2331 32065 33778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2331g00012 4 401 Polysaccharide Lyase AT5G63180 74.876 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2331g00012 K01728 - zju:107415231 721.465