Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2326g00007 ATGGCAGACCCAATTCCACCGAAGAAGACGAAAGGCCAGCAAAAGATCGAAGTCAAACCGATGGATGACGCCAAAAAGCGCAGTGTTACCTTCACAAAACGTAGAGCTGGCCTTTTTAAGAAGGCAGACCAGCTCTGTGCTCTCACCGGCGCCGAAGTGGCTCTCATGGTGATCTCTCCGGGAGGCAAGCCGTTCACGTTCGGCAGCCCCGCCGTCGACGCCGTGATAGCGAGGTACAAGAGTCGCCGACGGTGGATCAGCAGAAACCTGAGATTAGGGAAATCATGGAACAGTTGGCGTACGAGGATAAGCGAGCAGAGGAACTGA 327 0.5474 MADPIPPKKTKGQQKIEVKPMDDAKKRSVTFTKRRAGLFKKADQLCALTGAEVALMVISPGGKPFTFGSPAVDAVIARYKSRRRWISRNLRLGKSWNSWRTRISEQRN 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2326g00007 108 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Pral2326g00007 108 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Pral2326g00007 108 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Pral2326g00007 108 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Pral2326g00007 108 PANTHER MADS BOX PROTEIN 14 90 - -
Pral2326g00007 108 Gene3D - 24 90 IPR036879 GO:0003677|GO:0046983
Pral2326g00007 108 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Pral2326g00007 108 MobiDBLite consensus disorder prediction 1 23 - -
Pral2326g00007 108 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Pral2326g00007 108 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Pral2326g00007 108 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2326g00007 Pral-Chr2326 125648 125974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2326g00007 8 81 Type I MADS-box Gene Family AT4G36590 55.405 2.51e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral2326g00007 SRF-TF 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2326g00007 - K12412 pcin:129293116 137.887