Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2313g00115 ATGGATGAATCATCTCTGCCAGCGACGATGATCTTCTCCGGCTTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCGAATGAAGTTGCCTCCATGGAAAAGTTCCCTTTTGTTCAACTCAGGAATGTCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTTTTCGAGGAGATTCAGGAAACAGATTCCCCATTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGCAGAGCGAAGCACTTGATCCAAGAGTGCCAGGAAAGCAGCTCACTCTGGAGTCTCATACAGTTAGAGTTTATTTCCAATCAATTCTATGTGCTTGTAAAGGAGATGGGAAGGGCTCTAGACATCCTTCCTCTGAGCTTGCTTAACATCACAACAGATATAAGAGAGCAAGTGGAGCTTCTGCACAAGCAAGCAAAAGCGGTTGAGCTGTTCATTGATCCTCGTGAGCTGCAACGAAGAGAGCAGCTTCTGCATGTAATGACCCACAACACACTACAGAACAAGAAAAACAAGGGATTTCCTGAGTTTGGGAAAGTGAAACAAATGTTAAGCAGCATTGGTTTGAGAACTCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGACTGAAACTCAGAATCAGGCAGGTACAGGAGGGTTAATCGTCATGTCTAATATACACAATCTCATATCTCTGGTTACTTATTCAAAATCCATGATATTCAGAGACGGCGAAAACGAGATAGATGAAGATTGTAAACCAGCAGTGTCCGCATTCACACATAAGAGCTCCGATCATTCTTTTTCTTCACTTTCTTCTCAGATGATACCGTCAGCGCCTAATGTTCCTGACGAATTTCGATGCCCAATTACACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGGCATACGTATGATCGAATTTCAATTGCACAGTGGATAAACTCGGGACATCACACTTGCCCGAAAAGTGGGCAAACACTAATCCACACTGCTCTCGTACCCAACTATGCACTGAAGAGTCTTGTGCAGCAATGGTGCCACGAGAATAACGTCCCAGTGAATGAGCCGACATCATCTTCTTCCTCAACTTCGGAGGATCCCAGGAGCAAGGACAACTCAAACGAAAATACCGTCGATCATATCTCGGCTAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTGGGAAAATTAGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTAAGATTACTAGCAAAAACTGGGATGGATAATCGAAGAATTATCGCCGAGGCAGGGGCAATTCCATTTCTAGTGACATTGCTGGGATCTCATGATCCAAGAATCCAGGAGCATGTCGTCACGGCCTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTTTGATAGTGGCCGCCGGAGCAGTGGATCACATAGTAGAAGTGCTCGGATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCGATCTTTAGTTTGACTATGGTTGATGACTGCAAGGTAGAAATCGGAGCCCGTCCAAAGGCCATACCCGCATTAGTAGGACTGTTAAGAGAGGGCACACCTATTGGGAAAAGAGATGCTGCTACTGCCATTTTCAATCTTGCAGTTTACAATCCTAACAAGGCCAAAATCGTTAATGCTGGGGCCGTTCCTTTGCTTATCGAGCTGCTTATGGATGACAAGGCTGGGATCACAGATGATTCTTTGGCTGTGCTTGCTTTGCTTCTGGGTTGTTCTGAAGGTTTGGAGAAGATAAGGAATAGTAAAGTGTTGGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGGTCACCCAAAGGGAAGGAGAATTCTATAACACTTCTGCTCGGGTTGTGCAAGGAGGAAGGTGAAGTGGTGGCAAGCAGACTATTGGCAAATCCGCGAAGCATTCCTTCTCTTCAAAGCTTGGCAGCCGACGGTTCTTTAAGGGCACGAAGGAAGGCCGATGCTTTGCTTAGACTGCTTAATAGGTTCTGCTCTCAACCTCATCATTCTCTTTGA 2082 0.4467 MDESSLPATMIFSGFLPTGSLLDSLVHISNEVASMEKFPFVQLRNVSSMIRRVKLLSSLFEEIQETDSPFPPSSILCFTELFSVISRAKHLIQECQESSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNITTDIREQVELLHKQAKAVELFIDPRELQRREQLLHVMTHNTLQNKKNKGFPEFGKVKQMLSSIGLRTPSDYDREISKLETETQNQAGTGGLIVMSNIHNLISLVTYSKSMIFRDGENEIDEDCKPAVSAFTHKSSDHSFSSLSSQMIPSAPNVPDEFRCPITLDLMRDPVIVSSGHTYDRISIAQWINSGHHTCPKSGQTLIHTALVPNYALKSLVQQWCHENNVPVNEPTSSSSSTSEDPRSKDNSNENTVDHISAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHVVTALFNLSIFDNNKVLIVAAGAVDHIVEVLGSGKTMEARENAAAAIFSLTMVDDCKVEIGARPKAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLIELLMDDKAGITDDSLAVLALLLGCSEGLEKIRNSKVLVPLLIDLLRFGSPKGKENSITLLLGLCKEEGEVVASRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRFCSQPHHSL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2313g00115 693 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Pral2313g00115 693 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Pral2313g00115 693 Gene3D - 375 521 IPR011989 -
Pral2313g00115 693 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Pral2313g00115 693 Gene3D - 27 133 IPR036537 GO:0007166
Pral2313g00115 693 SUPERFAMILY ARM repeat 405 682 IPR016024 -
Pral2313g00115 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Pral2313g00115 693 Gene3D - 522 685 IPR011989 -
Pral2313g00115 693 FunFam RING-type E3 ubiquitin transferase 499 686 - -
Pral2313g00115 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 444 486 IPR000225 GO:0005515
Pral2313g00115 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Pral2313g00115 693 SUPERFAMILY RING/U-box 286 362 - -
Pral2313g00115 693 PANTHER U BOX DOMAIN-CONTAINING 44 684 - -
Pral2313g00115 693 SMART arm_5 433 473 IPR000225 GO:0005515
Pral2313g00115 693 SMART arm_5 517 557 IPR000225 GO:0005515
Pral2313g00115 693 SMART arm_5 474 515 IPR000225 GO:0005515
Pral2313g00115 693 SMART arm_5 388 431 IPR000225 GO:0005515
Pral2313g00115 693 SMART arm_5 558 598 IPR000225 GO:0005515
Pral2313g00115 693 SMART arm_5 599 640 IPR000225 GO:0005515
Pral2313g00115 693 MobiDBLite consensus disorder prediction 359 376 - -
Pral2313g00115 693 MobiDBLite consensus disorder prediction 359 388 - -
Pral2313g00115 693 FunFam RING-type E3 ubiquitin transferase 287 361 - -
Pral2313g00115 693 Pfam Armadillo/beta-catenin-like repeat 435 472 IPR000225 GO:0005515
Pral2313g00115 693 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2313g00115 Pral-Chr2313 538586 541011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2313g00115 19 688 U-box Gene Family AT3G46510 38.187 3.51e-131 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2313g00115 - - qsa:O6P43_013820 1058.13