Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2313g00108 ATGGAAAGTAAGTCTCAGAAGCGGAACTTCTGCGCCTCTTCGGTTTTGCTTGAATTCTCAGCATCGGATGATCTCGAAGCTTTCAGAAAAGAAGTGGAAGAGAGGGGCCGCGACATCGACGTGGCAAGCTCTTGGTATGGGAGAAGAATTGGATCGAAGAAGATAGGTTGGGAGAAGAGGACGGCCCTCATGATTGCGTCTCTTTTCGGGAGTACTAGAGTGTTGAAGTATATAATTGAGGCTGGCAAGGTTGATGTGAACAAAACCTGTGGTTCTGATGGGGCCACGGCTCTGCATTGCGCTGTTGTTGGTGGCTCTCACGCTTCACTCGAGGTTGTTCAGCTCTTGCTTGGTGTTGGTGCCGATGTTGATTGCATTGATGCGAGTGGAAATAAGCCCGTTAACCTGATTGCCCCTGCCTTCAATTCCTTCTCCAACGCAAGGAGAAAGGCAATAGAGTTGCTGCTGAGAGGTGGGCAAGCAGATGAAATCATCAATCAGGAGATGGAGCAACATAAAATTGCGGTGCCTGCTTTCTCCTCAAAAGAAGGAACTGAGAAAAAGGAATATCCCGTTGATGTATCATTGCCTGACATAAACAGTGGTGTATATGGAACGGACGAGTTTAGAATGTACAATTTCAAGGTGAAGCCGTGTTCGAGGGCTTACACGCATGACTGGACCGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCACGTAAGTATCCTTACAGCTGCGTTCCCTGTCCTGAGTTTCGCAAGGGCGCATGCCAGAAGGGAGATGCTTGCGAGTATGCGCACGGTGTATTCGAGTCCTGGCTCCATCCTGCTCAATACAGAACAAAGCTTTGCAAGGATGAGATCGGATGCACTAGGAAGGTTTGTTTCTTTGCTCACAAAGCTGAAGAGTTGCGCCCCGTCTTTGCTTCTACTGGCTCTGCTGTGCCTTCTCCAAAGTCCTTGGCCAGTGTACTCGATATGACATCAATGAGTCCGTTGGCTCTTAGTTCCTCATCTTTGCCGATGCCAACTGTTTCGACTCCGCCTATGTCTCCCATAGCAGCTTCATCACCTCCTAACAGCGGAGGCTCGTGGCAGAACAAGAGAAATCTCACTCCACCATCATTGCAGCTTCCCGGCAGCCGACTGAAGGCTACCTTGAGTGCTAGGGATTTGGATTTGGATATGGAACTGCTGGGACTTGAAAGTCCTGCAAACCAGCATCGGCAGCAATTGATGGAAGAATTGGCTCGAATCTCCTCCCCGTCCCTACGAAACAAAGACTTCGGTAGGATTGGTGATTTGAACCCAACAAACCTTGATGACCTTCTCGGATATGTTGATCATTTTGCATCACCTCAATTACGCGGCCTTTCGGCACAGCTCTCATCTCCTAGTCAACTGAACTCTCCGGGTGGCCTTCAAATGCGCCAAAACATGAGCCCCCTTCGTGCGAGCTATCCAACCAACATGTCCTCCTCCCCGGTGAGGAAATCCTCTGCATTTGGGTTTGATTCATCAGCTGCTGTGGCGGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCGAAGAGAAGCCAGAGTTTTATTGATCGCGGTGAATCAGCGAGCCACCATCTGGGACTTTATTCACCTTCCCACCCTTCCTGTAGGGCGTCCTCTGCTGTTTCAGATTGGAGTTCTCCCGATGGAAAATTGGACTGGGGCATGAATGGACATGAGATGCACATGCCGAAGAAATCTGCTTCATTTGTGTTCAGGAATAATGGGGTGCCTGCCACTTCCATGGCTCCGTCAGAACACGGTGAACCAGACGTCTCATGGGTTCATTCGTTGGTTAAAGACGTGCCCTCCGGAGAGTTGTGTTGCTGA 1887 0.5013 MESKSQKRNFCASSVLLEFSASDDLEAFRKEVEERGRDIDVASSWYGRRIGSKKIGWEKRTALMIASLFGSTRVLKYIIEAGKVDVNKTCGSDGATALHCAVVGGSHASLEVVQLLLGVGADVDCIDASGNKPVNLIAPAFNSFSNARRKAIELLLRGGQADEIINQEMEQHKIAVPAFSSKEGTEKKEYPVDVSLPDINSGVYGTDEFRMYNFKVKPCSRAYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKAEELRPVFASTGSAVPSPKSLASVLDMTSMSPLALSSSSLPMPTVSTPPMSPIAASSPPNSGGSWQNKRNLTPPSLQLPGSRLKATLSARDLDLDMELLGLESPANQHRQQLMEELARISSPSLRNKDFGRIGDLNPTNLDDLLGYVDHFASPQLRGLSAQLSSPSQLNSPGGLQMRQNMSPLRASYPTNMSSSPVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGESASHHLGLYSPSHPSCRASSAVSDWSSPDGKLDWGMNGHEMHMPKKSASFVFRNNGVPATSMAPSEHGEPDVSWVHSLVKDVPSGELCC 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2313g00108 628 MobiDBLite consensus disorder prediction 343 384 - -
Pral2313g00108 628 SUPERFAMILY Ankyrin repeat 16 139 IPR036770 -
Pral2313g00108 628 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Pral2313g00108 628 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 273 IPR000571 GO:0046872
Pral2313g00108 628 ProSiteProfiles Zinc finger C3H1-type profile. 248 275 IPR000571 GO:0046872
Pral2313g00108 628 Pfam Ankyrin repeats (3 copies) 56 125 IPR002110 GO:0005515
Pral2313g00108 628 PANTHER UNKEMPT FAMILY MEMBER 18 621 IPR045234 -
Pral2313g00108 628 Gene3D - 249 311 - -
Pral2313g00108 628 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Pral2313g00108 628 SMART ANK_2a 58 88 IPR002110 GO:0005515
Pral2313g00108 628 SMART ANK_2a 93 125 IPR002110 GO:0005515
Pral2313g00108 628 SMART c3hfinal6 248 274 IPR000571 GO:0046872
Pral2313g00108 628 Gene3D - 1 176 IPR036770 -
Pral2313g00108 628 FunFam Zinc finger CCCH domain-containing protein 66 206 274 - -
Pral2313g00108 628 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2313g00108 Pral-Chr2313 464207 467177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2313g00108 14 620 C2H2 Transcription Factor Family AT5G12850 40.000 6.07e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral2313g00108 Ank_4 4.7e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2313g00108 - - gmx:100783376 833.943