Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral2313g00029 | ATGAGTTTTGTCTTTCGAGGAAGCAGGGCAGATATTGAAAATGGATTTTCAGGATTTAGACCTGAGAGGCGGATACAGCATGTTCTTGGAGAGCGACGTCGTAATTCTAGTTCACTCACTTTTCTTGTCACAGTCCTCTTGCTATTTATGGTATTAAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTCTTCTTGACGGCTACATTGTTAAGAATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGGAGCCAGTGACCTTTTTGACCACTCTGAACTGCGTTTGCACATGCCGCCTTCGATAGCACTGCAAGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGAGATAGATTATGAAACTTTAAGAGCTCTGGATTCAGATTACGTTCCTAGTGCACCTTCCATGACTGAGGAAGAGATCAGTGCTCTTCCCGTCCACAAATACAAGGTTTCTGGTACTAAAGACAGTGATTCCTTAAGTCAACAGGCCTCATCTTCTACATCTCCTGAGAAGAAGCAAGATCCCTCAAATGCAGCTGGGAGCATGAAAGCTCCTGATGATGAGCTGACTTGCAGTGTCTGTCTGGAGCAAGTAAATGTTGGAGATCTGCTCCGTAGCTTGCCTTGCTTGCACCAGTTTCATGCTAATTGCATTGATCCCTGGCTCCGGCAGCAAGGAACATGCCCCATCTGTAAATTTAGAGCTAGATCTGGATGGCAAGAATCTAGAGCTAATGAAGCCAGCAGTACATCAGATTTGGTTTGA | 813 | 0.4551 | MSFVFRGSRADIENGFSGFRPERRIQHVLGERRRNSSSLTFLVTVLLLFMVLNSHQMSPNFLLWLVLGVFLTATLLRMYATCQQLQAQAQAHAAGASDLFDHSELRLHMPPSIALQGLRLQLALLDREFDEIDYETLRALDSDYVPSAPSMTEEEISALPVHKYKVSGTKDSDSLSQQASSSTSPEKKQDPSNAAGSMKAPDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPICKFRARSGWQESRANEASSTSDLV | 270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral2313g00029 | 270 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 254 | - | - | |
| Pral2313g00029 | 270 | Pfam | Ring finger domain | 206 | 248 | IPR001841 | - | |
| Pral2313g00029 | 270 | ProSiteProfiles | Zinc finger RING-type profile. | 207 | 248 | IPR001841 | - | |
| Pral2313g00029 | 270 | SMART | ring_2 | 207 | 247 | IPR001841 | - | |
| Pral2313g00029 | 270 | MobiDBLite | consensus disorder prediction | 170 | 191 | - | - | |
| Pral2313g00029 | 270 | CDD | RING-H2_PA-TM-RING | 206 | 248 | - | - | |
| Pral2313g00029 | 270 | MobiDBLite | consensus disorder prediction | 167 | 201 | - | - | |
| Pral2313g00029 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 253 | IPR013083 | - | |
| Pral2313g00029 | 270 | SUPERFAMILY | RING/U-box | 202 | 250 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral2313g00029 | Pral-Chr2313 | 120809 | 127725 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral2313g00029 | 1 | 257 | C3H Transcription Factor Family | AT3G55530 | 73.485 | 5.53e-127 | 360 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral2313g00029 | K16283 | - | gmx:100777936 | 388.267 |