Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2310g00003 ATGGCTCGGTCTGCGAGAGGTCAGCAACAAGAATTGGAAGACGACGACGTAGATCACCTGACTGGAAATGGCTCTTCTTCGCACAAAGTGAAGGTGGATGAAACGGCTAGAGAGCAGCGGGTTAACGCGCATCGTTCTAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATAAATGAAAGATTTCAGATTCTGAGAGACCTCATTCCTCAAAATGATCAAAAAAGGGATAAGGCTTCTTTCTTGTTGGAGGTTATCGAGTATATTCAATTTTTACAGGAGAAATTACAGATGTATGAGCAATCTTACCAAGGCTGGAACCAGGAGCCAATGAAATTAATTCCTTGGGCTATACAAAATGGTTCTGGCCATGAGAACAATGACATTGTCTCTCCATCACTGCCGCTAAATGCACAGAATACAATTGAATCTGACTTGTCACCAACAGTTATCCATAAGGCTGGGCCCCCTGGTTTAGCTTCTGATGCGGTTCCCCTGGGCATGCAAATGCGGCTGGACATGTTTGATCTGGCTGTGAGCAGTGGCCTTCCAACCCAACATTTACATGAAGCAGTTTCTAACACCGAGAACACACCTTCCAATACTCAGCCTCACGAGTGTCTTGGTGAACCCAAGGAGGGTGCATATGATTTTCGAAATAATACATTGAAGGATCAAGACGAGCTGACATTTGAAAGTGAATCGGTTAGCATCTCAAGAGCCTATTCTCAGGGAATATTGGATAATTTCATGCAAGCATTGCGGTCTTCGGGTGTGGATTTATCTGAGGCCAACGTTGCAGTACAAATTGATGTAGGGAGACGATCAATTGCCTCCACGTCTAGCTCAAAGGATCATGGGAACCAATTTGTGAACACGCAATCAATACCATGCCCAGGAGTCGACTACTACAGTGAGGATTCTGAGCAAGCTCTTAAGAGGCTCAGACGAGAAGAGAGTCTGCCTCAAGAAATGATGGTGGGATCTAAAGGACAACATGGTATGATCACGTTTCAATGGAATTAG 1029 0.448 MARSARGQQQELEDDDVDHLTGNGSSSHKVKVDETAREQRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQMYEQSYQGWNQEPMKLIPWAIQNGSGHENNDIVSPSLPLNAQNTIESDLSPTVIHKAGPPGLASDAVPLGMQMRLDMFDLAVSSGLPTQHLHEAVSNTENTPSNTQPHECLGEPKEGAYDFRNNTLKDQDELTFESESVSISRAYSQGILDNFMQALRSSGVDLSEANVAVQIDVGRRSIASTSSSKDHGNQFVNTQSIPCPGVDYYSEDSEQALKRLRREESLPQEMMVGSKGQHGMITFQWN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2310g00003 342 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 318 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pral2310g00003 342 Gene3D - 41 114 IPR036638 GO:0046983
Pral2310g00003 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Pral2310g00003 342 Coils Coil 90 110 - -
Pral2310g00003 342 MobiDBLite consensus disorder prediction 30 56 - -
Pral2310g00003 342 SMART finulus 49 99 IPR011598 GO:0046983
Pral2310g00003 342 MobiDBLite consensus disorder prediction 8 22 - -
Pral2310g00003 342 FunFam BHLH domain class transcription factor 41 113 - -
Pral2310g00003 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 120 IPR036638 GO:0046983
Pral2310g00003 342 CDD bHLH_AtBIM_like 42 118 - -
Pral2310g00003 342 MobiDBLite consensus disorder prediction 1 56 - -
Pral2310g00003 342 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2310g00003 Pral-Chr2310 1454 7168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2310g00003 3 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 38.538 4.41e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2310g00003 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2310g00003 - - gmx:100791730 377.096