Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral230g00001 | ATGAAGCTAATCATGGTCGCCTTCCTTGTGATTCCGGATTTTGGAAGATCTGCTTATGTCTATAATCACTTCATTCAATCATGCATCCACATGAATCCTCAAGCAGTCATAAGCAGATTCAGGAACTGGAAGAACATATTTGTCAAGAAAGAAGACTTTACAATGCAGGCTGAGAAGTATATAACACAGAATGGAATTGAAGTCTTAGAGGAACTCATTGCTAGCAAGATCATAGAGAAAAGTCTTAATTCAGAAACAAGAACATCAGTTCCAACTACGGAGAAGAATGAGATCCTGGAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACGCCAAAGATTTGGAGATGATTGAAAAAAAGCAAGTTCCTGAAGGCAAGCAAGTTAATACAGCCATGGACAGATTCAAATCAAATGAAAGCACTTCACCTGCCATGGCGAAAACCGAAAAAATGGCAGCAGACACAGAACACGGAACATATCCTCAGATTTCTGCATCTGAGAATGTACAGAAAGAATGGACTTGTGCCATATGCCAGCTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAATACAAAAACTAAAGGAACGCCGGTGACAGACACAGGAAGGGGAGCATCTTCTGAGGTTTCTGCATCTAAGGACGTACAGATAATGTGGACTTGTAAAATATGTCAATTGAAAATACTTTCTGAGGTTGATTTGAATTCCCACTTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAACGGGAAAACTAAAGGAACCGAAGTGACAGACACAGGAAGTGGAGCATCTTCTCAGGTTTCTGCATCTAAAGATGTACAGAAAATGTGGACTTGTAAAATATGTCAATTGAAAATATGTTCTGAAGGTAGTTTGAATTCCCACCTGAAAGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAACGCAAAAAGCCAGCTTGTTGCTGAGAAAGTTCCCGGTGAGAAAGAATGA | 1035 | 0.4077 | MKLIMVAFLVIPDFGRSAYVYNHFIQSCIHMNPQAVISRFRNWKNIFVKKEDFTMQAEKYITQNGIEVLEELIASKIIEKSLNSETRTSVPTTEKNEILETNRGRLLMEQKDAKDLEMIEKKQVPEGKQVNTAMDRFKSNESTSPAMAKTEKMAADTEHGTYPQISASENVQKEWTCAICQLTMPSEANLNSHLQGRKHKAACEALNTKTKGTPVTDTGRGASSEVSASKDVQIMWTCKICQLKILSEVDLNSHLQGRKHKAACEALNGKTKGTEVTDTGSGASSQVSASKDVQKMWTCKICQLKICSEGSLNSHLKGKKHKAACEALNAKSQLVAEKVPGEKE | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral230g00001 | 344 | SUPERFAMILY | beta-beta-alpha zinc fingers | 281 | 332 | IPR036236 | - | |
| Pral230g00001 | 344 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 209 | IPR036236 | - | |
| Pral230g00001 | 344 | Pfam | Zinc-finger of C2H2 type | 236 | 260 | - | - | |
| Pral230g00001 | 344 | Pfam | Zinc-finger of C2H2 type | 175 | 199 | - | - | |
| Pral230g00001 | 344 | Pfam | Zinc-finger of C2H2 type | 297 | 321 | - | - | |
| Pral230g00001 | 344 | PANTHER | OS06G0651300 PROTEIN-RELATED | 120 | 214 | - | - | |
| Pral230g00001 | 344 | SMART | ZnF_U1_5 | 294 | 328 | IPR003604 | GO:0003676|GO:0008270 | |
| Pral230g00001 | 344 | SMART | ZnF_U1_5 | 233 | 267 | IPR003604 | GO:0003676|GO:0008270 | |
| Pral230g00001 | 344 | SMART | ZnF_U1_5 | 172 | 206 | IPR003604 | GO:0003676|GO:0008270 | |
| Pral230g00001 | 344 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 177 | 199 | IPR013087 | - | |
| Pral230g00001 | 344 | SUPERFAMILY | beta-beta-alpha zinc fingers | 228 | 270 | IPR036236 | - | |
| Pral230g00001 | 344 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - | |
| Pral230g00001 | 344 | SMART | c2h2final6 | 236 | 260 | IPR013087 | - | |
| Pral230g00001 | 344 | SMART | c2h2final6 | 175 | 199 | IPR013087 | - | |
| Pral230g00001 | 344 | SMART | c2h2final6 | 297 | 321 | IPR013087 | - | |
| Pral230g00001 | 344 | Gene3D | Classic Zinc Finger | 219 | 266 | - | - | |
| Pral230g00001 | 344 | Gene3D | Classic Zinc Finger | 148 | 205 | - | - | |
| Pral230g00001 | 344 | Gene3D | Classic Zinc Finger | 280 | 327 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral230g00001 | Pral-Chr230 | 4564 | 7357 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral230g00001 | 168 | 343 | C2H2 Transcription Factor Family | AT2G19380 | 22.798 | 4.79e-12 | 65.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral230g00001 | - | - | pcin:129306216 | 367.851 |