Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2304g00048 ATGGAGCTAGCCTCTGTGAGATGTGCACTGAGCCCAAGAAGCCATATTTCTTACTTGATGGATGGTGGTGAGAGTGATGCTAGTAAGGCTGGCAAAAGGAGGAGAAAAGATTCTTCTTTGGCCATCTTAGAAGCCAATGAACAGCCACAAGAACGGCAACCACAGGGTGACCGATCAACCACCACCACCACAACCACCATAAAGAGAAGCTCAAGGTTTCGAGGAGTTAGCAGACATAGGTGGACTGGAAGGTTTGAGGCTCACCTATGGGATAAAGGAACATGGAATCCAACTCAGAAAAAGAAAGGGAAGCAAGTTTATCTTGGGGCTTATACTGATGAAGAAGCGGCTGCTAGAGCTTATGATTTAGCTGCACTAAAGTACTGGGGAACTTCAACTTGCACAAATTTCCCTGTGTCTGAGTATGAGAAAGAGATTGGGATCATGAAAACGGTAACCAAAGAAGAATACCTTGCTTCATTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAGGTACAGAGGAGTAGCAAGGCACCATCAAAATGGCAGATGGGAAGCAAGGATAGGGAGAGTATTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCTGCTCGAGCATATGACATAGCAGCAATTGAGTACAGAGGCATAAATGCAGTGACAAATTTTGACTTGAGCACATACGTCAGATGGCTAAGACCTGGAGAACCCTCTTCTTCTTCTTTACTAGTGGGAAAGCCAAACACAGATCCTCAGAACATGACAACCTCAAACCCTGTCCAAGCAGAAGGAACCACTCAGATATCCAACTTCATACTCCATCCATTCCCAGCTGGTGCTTCTGACAGTACAAAGAAGCAAGACAGTTCACAATACAGGAGCTCTCTAGGTGTTTGCAATAACAAGTCACCTTCTCCAACAGCACTAGGGATTCTCATGAAATCCTCAGTATTTAGTGATCTGATGCAGAAGAATCTGAATTCTGCTAAAGAAGAAACAGAAGAAAGTGAATTGAAAATCCCACAAGAAGGCAGTGATGGGGTTGGAGTGGCTTTTGATCATGAAATTGCGAGTAACCCTTTCTTATGCCCTTCCAATAATAGCATATTTTGCATGGAGTCACCAGGAGAAAACATTTGGCCATTGTATCATAGAACCACGCAATCCCTGTGGAATGGTGCTTTAAACTGA 1215 0.4395 MELASVRCALSPRSHISYLMDGGESDASKAGKRRRKDSSLAILEANEQPQERQPQGDRSTTTTTTTIKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYTDEEAAARAYDLAALKYWGTSTCTNFPVSEYEKEIGIMKTVTKEEYLASLRRRSSGFSRGVSRYRGVARHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYVRWLRPGEPSSSSLLVGKPNTDPQNMTTSNPVQAEGTTQISNFILHPFPAGASDSTKKQDSSQYRSSLGVCNNKSPSPTALGILMKSSVFSDLMQKNLNSAKEETEESELKIPQEGSDGVGVAFDHEIASNPFLCPSNNSIFCMESPGENIWPLYHRTTQSLWNGALN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2304g00048 404 MobiDBLite consensus disorder prediction 290 306 - -
Pral2304g00048 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 298 - -
Pral2304g00048 404 Coils Coil 327 347 - -
Pral2304g00048 404 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 PRINTS Ethylene responsive element binding protein signature 214 234 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Pral2304g00048 404 SUPERFAMILY DNA-binding domain 71 140 IPR016177 GO:0003677
Pral2304g00048 404 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 SMART rav1_2 72 144 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 FunFam AP2-like ethylene-responsive transcription factor 71 140 - -
Pral2304g00048 404 Coils Coil 404 404 - -
Pral2304g00048 404 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 Pfam AP2 domain 71 130 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Pral2304g00048 404 MobiDBLite consensus disorder prediction 26 41 - -
Pral2304g00048 404 MobiDBLite consensus disorder prediction 17 73 - -
Pral2304g00048 404 FunFam AP2-like ethylene-responsive transcription factor 173 234 - -
Pral2304g00048 404 Gene3D AP2/ERF domain 71 140 IPR036955 GO:0003700|GO:0006355
Pral2304g00048 404 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Pral2304g00048 404 MobiDBLite consensus disorder prediction 287 306 - -
Pral2304g00048 404 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2304g00048 Pral-Chr2304 288515 290792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2304g00048 33 236 AP2-EREBP Transcription Factor Family AT5G57390 60.294 2.05e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral2304g00048 AP2 3.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2304g00048 - - gmx:100799621 523.087