Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2304g00047 ATGTTGTTCACAAACAGAATGCTGCTTGACAAAGGGGATGAAGGAAGGAACTTGAGACAACGTCTTGGCGGTCCGTGCCTGGCCACCAATCCAATTGATAGGTGCTGGAGATGCGATCCCAACTGGGAAAAAAACCGCCAGAAATTGGCTGATTGTGCATTAGGATTCGGGAAAGGCACAACTGGTGGAAAGGGTGGTCGATACTATGTGGTAACAGATCCCTCGGATAATGATGTGCTTAACCCCAAAGAAGGTACCCTTAGGCATGCAGTTACAAGGAACGGTCCTTTGTGGATTATCTTTCAACGCAGCATGGTGATTAGGCTGCAGCAGGAGCTAATTATGACTGGGGATAAGACCATTGATGGCAGAGGGGCTAGTGTTATAATCACCGGAGGGGCCGGCATTACCATCCAGTTTGTCAAGAACGTGATCATTCATAACATTAAGATCTTCAACATAGTGTCTACCAGTGGTGGATTGATTAGAGATAGTGAAGCCCATTTTGGTCTAAGGACAAGGAGCGATGGTGACGGGATTTCAATCTTTGGGTCCAGCAAAATCTGGATTGATCATGTTTCCATGAGCAATTGCCAAGATGGACTTGTCGATGCCATCATGGGATCCACAGCCATTACCATCTCCAACAGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGCGCCAGTGACAGCTATGCAGGAGACCAGATTATGCAAATCACTGTAGCATTCAATCACTTTGGACAGGGATTAATCCAGAGGATGCCAAGGTGCAGGTGGGGTTTCGTTCATGTGGTTAACAATGACTATACTCATTGGGAAATGTACGCCATTGGCGGCAGCCAGCATCCTACCATAATCAGTGAGGGTAACAGATTCATAGCCCCGAATAACCTGTTTGCCAAAGAGGTTTGTAAGAGAGATTACTCACCACCGGACGTGTGGAAGAACTGGCAATGGAGATCAGTCAACGACCTACTCATGAACGGAGCTACGTTCACGGAATCTGGGACTCAGCTTCCAGTGGCAACGAGTGACATGCTCAAGGGAAAGCCTGGATCATACGTTTCAAGACTCACGCGCTTCTCCGGAATCATCAGGTGCCATGTGGGTAAGCCCTGCTAA 1131 0.4757 MLFTNRMLLDKGDEGRNLRQRLGGPCLATNPIDRCWRCDPNWEKNRQKLADCALGFGKGTTGGKGGRYYVVTDPSDNDVLNPKEGTLRHAVTRNGPLWIIFQRSMVIRLQQELIMTGDKTIDGRGASVIITGGAGITIQFVKNVIIHNIKIFNIVSTSGGLIRDSEAHFGLRTRSDGDGISIFGSSKIWIDHVSMSNCQDGLVDAIMGSTAITISNSHFTKHNEVMLFGASDSYAGDQIMQITVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWEMYAIGGSQHPTIISEGNRFIAPNNLFAKEVCKRDYSPPDVWKNWQWRSVNDLLMNGATFTESGTQLPVATSDMLKGKPGSYVSRLTRFSGIIRCHVGKPC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2304g00047 376 Gene3D - 29 369 IPR012334 -
Pral2304g00047 376 SUPERFAMILY Pectin lyase-like 30 366 IPR011050 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 76 101 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 112 128 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 176 197 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Pral2304g00047 376 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Pral2304g00047 376 SMART amb_all 104 301 IPR002022 -
Pral2304g00047 376 PANTHER PECTATE LYASE 18-RELATED 18 374 IPR045032 GO:0030570
Pral2304g00047 376 Pfam Pectate lyase 118 295 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2304g00047 Pral-Chr2304 283208 285503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2304g00047 20 376 Polysaccharide Lyase AT1G14420 64.110 4.83e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2304g00047 K01728 - gmx:100796307 561.992