Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2304g00034 ATGGACTCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCGCTGGCCACCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGATATCCCAAAGAAGAGGTGATTGGCAAGAATGGTAAGATTTTTCAAGGACCAGGGACCTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTACCGTAGAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGCCCCGTATTTAACAAGTATGATGGTAGGGTGAGTCACTTTGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCGGTGTTAGGAAAACTGACGTTAATTTGAGTGATGATGGGTCTGTGGCTCAGGATTTTGTGCATGGATCATGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTCGGTCGTGTCTTGTCCCTTCATCAAGTTTCAGAAGTAGAACATGAAGGGAGAGAATCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTCTGCTAACCCACTACAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTTTTCTTAGTTCATCATTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTATGCCAGTGAAGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGGCCAAATACTGATGCATCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACATATTTTGAATTACAGGAAGGACGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGGGGGAGAAAGGCAAGGGAGGCTAG 1083 0.4377 MDSQLGLIDQSFDSRYSCHVREALDELPDNFIITDPSIAGHPIVFASHGFLKMSGYPKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERPIQINLLNYRRDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCGVRKTDVNLSDDGSVAQDFVHGSCRKEVCSDSLLELGRVLSLHQVSEVEHEGRESNGEEPCEASDVDKRKAMTAMDNIFSLLTHYSELTGRLVCRKRCSISDVGFLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASEAFLKLTGYVKDEVLGRNCRFLSGPNTDASALYLIRESIKAEQPCTVHILNYRKDESPFWNFLHISPIRDASGKGEKGKGG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2304g00034 360 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Pral2304g00034 360 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Pral2304g00034 360 Gene3D PAS domain 262 356 - -
Pral2304g00034 360 ProSiteProfiles PAS repeat profile. 275 321 IPR000014 -
Pral2304g00034 360 SMART pac_2 93 136 IPR001610 -
Pral2304g00034 360 PANTHER PROTEIN TWIN LOV 1 6 353 - -
Pral2304g00034 360 Pfam PAS domain 262 353 IPR000014 -
Pral2304g00034 360 Pfam PAS domain 32 131 IPR000014 -
Pral2304g00034 360 NCBIfam PAS domain S-box protein 21 128 IPR000014 -
Pral2304g00034 360 NCBIfam PAS domain S-box protein 275 353 IPR000014 -
Pral2304g00034 360 CDD PAS 27 130 IPR000014 -
Pral2304g00034 360 Gene3D PAS domain 17 141 - -
Pral2304g00034 360 SMART pas_2 18 87 IPR000014 -
Pral2304g00034 360 SMART pas_2 250 319 IPR000014 -
Pral2304g00034 360 CDD PAS 271 349 IPR000014 -
Pral2304g00034 360 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Pral2304g00034 360 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 353 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2304g00034 Pral-Chr2304 213486 216891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2304g00034 15 353 AGC Kinase Gene Family AT5G58140 30.189 1.19e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2304g00034 - - qsa:O6P43_033065 475.322