Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2304g00033 ATGGACTCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCGCTGGCCACCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGATATCCCAAAGAAGAGGTGATTGGCAAGAATGGTAAGATTTTTCAAGGACCAGGGACCTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTACCGTAGAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGCCCCGTATTTAACAAGTATGATGGTAGGGTGAGTCACTTTGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCGGTGTTAGGAAAACTGACGTTAATTTGAGTGATGATGGGTCTGTGGCTCAGGATTTTGTGCATGGATCATGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTCGGTCGTGTCTTGTCCCTTCATCAAGTTTCAGAAGTAGAACATGAAGGGAGAGAATCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTCTGCTAACCCACTACAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTTTTCTTAGTTCATCATTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTATGCCAGTGAAGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGGCCAAATACTGATGCATCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACATATTTTGAATTACAGGAAGGACGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGGGAGGCTAG 1068 0.4354 MDSQLGLIDQSFDSRYSCHVREALDELPDNFIITDPSIAGHPIVFASHGFLKMSGYPKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERPIQINLLNYRRDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCGVRKTDVNLSDDGSVAQDFVHGSCRKEVCSDSLLELGRVLSLHQVSEVEHEGRESNGEEPCEASDVDKRKAMTAMDNIFSLLTHYSELTGRLVCRKRCSISDVGFLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASEAFLKLTGYVKDEVLGRNCRFLSGPNTDASALYLIRESIKAEQPCTVHILNYRKDESPFWNFLHISPIRDASGKGG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2304g00033 355 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 353 IPR035965 -
Pral2304g00033 355 ProSiteProfiles PAS repeat profile. 275 321 IPR000014 -
Pral2304g00033 355 SMART pac_2 93 136 IPR001610 -
Pral2304g00033 355 Gene3D PAS domain 262 354 - -
Pral2304g00033 355 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Pral2304g00033 355 CDD PAS 27 130 IPR000014 -
Pral2304g00033 355 SMART pas_2 18 87 IPR000014 -
Pral2304g00033 355 SMART pas_2 250 319 IPR000014 -
Pral2304g00033 355 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Pral2304g00033 355 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Pral2304g00033 355 CDD PAS 271 353 IPR000014 -
Pral2304g00033 355 Pfam PAS domain 32 131 IPR000014 -
Pral2304g00033 355 Pfam PAS domain 262 353 IPR000014 -
Pral2304g00033 355 NCBIfam PAS domain S-box protein 21 128 IPR000014 -
Pral2304g00033 355 NCBIfam PAS domain S-box protein 275 352 IPR000014 -
Pral2304g00033 355 Gene3D PAS domain 17 141 - -
Pral2304g00033 355 PANTHER PROTEIN TWIN LOV 1 6 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2304g00033 Pral-Chr2304 213486 216891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2304g00033 15 353 AGC Kinase Gene Family AT5G58140 30.189 6.87e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2304g00033 - - qsa:O6P43_033065 475.322