Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral2304g00029 | ATGGACTCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCGCTGGCCACCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGATATCCCAAAGAAGAGGTGATTGGCAAGAATGGTAAGATTTTTCAAGGACCAGGGACCTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTACCGTAGAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGCCCCGTATTTAACAAGTATGATGGTAGGGTGAGTCACTTTGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCGGTGTTAGGAAAACTGACGTTAATTTGAGTGATGATGGGTCTGTGGCTCAGGATTTTGTGCATGGATCATGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTCGGTCGTGTCTTGTCCCTTCATCAAGTTTCAGAAGTAGAACATGAAGGGAGAGAATCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTCTGCTAACCCACTACAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTTTTCTTAGTTCATCATTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTATGCCAGTGAAGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGGCCAAATACTGATGCATCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACATATTTTGAATTACAGGAAGGACGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGCGTTCAAGTAGAAGAAGGCTGTGAGAACAAGGAAGGTAGACAGGGCCTTAGCCCTGAGAGGATTCAGCTCAGCGTGGTAGGAGCAGTGAGGGTTGCTGTGAGGAGTTCATCATTGACTGCAGGATCTTCCAAGTCGCTTTGA | 1218 | 0.4417 | MDSQLGLIDQSFDSRYSCHVREALDELPDNFIITDPSIAGHPIVFASHGFLKMSGYPKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERPIQINLLNYRRDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCGVRKTDVNLSDDGSVAQDFVHGSCRKEVCSDSLLELGRVLSLHQVSEVEHEGRESNGEEPCEASDVDKRKAMTAMDNIFSLLTHYSELTGRLVCRKRCSISDVGFLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASEAFLKLTGYVKDEVLGRNCRFLSGPNTDASALYLIRESIKAEQPCTVHILNYRKDESPFWNFLHISPIRDASGKIAYFVGVQVEEGCENKEGRQGLSPERIQLSVVGAVRVAVRSSSLTAGSSKSL | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral2304g00029 | 405 | FunFam | protein TWIN LOV 1 | 262 | 399 | - | - | |
| Pral2304g00029 | 405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 265 | 361 | IPR035965 | - | |
| Pral2304g00029 | 405 | CDD | PAS | 271 | 360 | IPR000014 | - | |
| Pral2304g00029 | 405 | Pfam | PAS domain | 32 | 131 | IPR000014 | - | |
| Pral2304g00029 | 405 | Pfam | PAS domain | 262 | 361 | IPR000014 | - | |
| Pral2304g00029 | 405 | ProSiteProfiles | PAS repeat profile. | 275 | 321 | IPR000014 | - | |
| Pral2304g00029 | 405 | NCBIfam | PAS domain S-box protein | 21 | 128 | IPR000014 | - | |
| Pral2304g00029 | 405 | NCBIfam | PAS domain S-box protein | 275 | 360 | IPR000014 | - | |
| Pral2304g00029 | 405 | CDD | PAS | 27 | 130 | IPR000014 | - | |
| Pral2304g00029 | 405 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 226 | - | - | |
| Pral2304g00029 | 405 | SMART | pas_2 | 18 | 87 | IPR000014 | - | |
| Pral2304g00029 | 405 | SMART | pas_2 | 250 | 319 | IPR000014 | - | |
| Pral2304g00029 | 405 | Gene3D | PAS domain | 17 | 141 | - | - | |
| Pral2304g00029 | 405 | ProSiteProfiles | PAS repeat profile. | 16 | 65 | IPR000014 | - | |
| Pral2304g00029 | 405 | Gene3D | PAS domain | 262 | 402 | - | - | |
| Pral2304g00029 | 405 | SMART | pac_2 | 325 | 366 | IPR001610 | - | |
| Pral2304g00029 | 405 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Pral2304g00029 | 405 | PANTHER | PROTEIN TWIN LOV 1 | 6 | 394 | - | - | |
| Pral2304g00029 | 405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 130 | IPR035965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral2304g00029 | Pral-Chr2304 | 213022 | 216890 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral2304g00029 | 15 | 392 | AGC Kinase Gene Family | AT5G58140 | 30.751 | 4.18e-57 | 199 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral2304g00029 | - | - | jre:108989811 | 517.309 |