Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2304g00027 ATGGACTCACAGTTGGGTCTGATAGACCAATCATTCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATCACCGACCCCTCTATCGCTGGCCACCCGATTGTTTTTGCGAGCCATGGGTTCTTGAAAATGTCAGGATATCCCAAAGAAGAGGTGATTGGCAAGAATGGTAAGATTTTTCAAGGACCAGGGACCTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGACCCATTCAGATCAATTTGTTGAATTACCGTAGAGATGGCAAACCTCTTTGGATTTTGTTTCACATGAGCCCCGTATTTAACAAGTATGATGGTAGGGTGAGTCACTTTGTGGCAGTTCAGGTACCTCTATCGAGGAAACGGAGGCGGTCGGGATGCGGTGTTAGGAAAACTGACGTTAATTTGAGTGATGATGGGTCTGTGGCTCAGGATTTTGTGCATGGATCATGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTCGGTCGTGTCTTGTCCCTTCATCAAGTTTCAGAAGTAGAACATGAAGGGAGAGAATCAAATGGTGAAGAACCGTGTGAGGCAAGTGATGTTGATAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTCTGCTAACCCACTACAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTTTTCTTAGTTCATCATTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTGACATGCCTATTGTGTATGCCAGTGAAGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTGCTGGGACGCAACTGTAGATTTCTAAGTGGGCCAAATACTGATGCATCAGCTTTATATTTGATAAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACATATTTTGAATTACAGGAAGGACGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGGTTGTGCGTGATCAGATAGCATATTTTGTGGGCGTTCAAGTAGAAGAAGGCTGTGAGAACAAGGAAGGTAGACAGGGCCTTAGCCCTGAGAGGATTCAGCTCAGCGTGGTAGGAGCAGTGAGGGTTGCTGTGAGGAGTTCATCATTGACTGCAGGATCTTCCAAGTCGCTTTGA 1233 0.4428 MDSQLGLIDQSFDSRYSCHVREALDELPDNFIITDPSIAGHPIVFASHGFLKMSGYPKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERPIQINLLNYRRDGKPLWILFHMSPVFNKYDGRVSHFVAVQVPLSRKRRRSGCGVRKTDVNLSDDGSVAQDFVHGSCRKEVCSDSLLELGRVLSLHQVSEVEHEGRESNGEEPCEASDVDKRKAMTAMDNIFSLLTHYSELTGRLVCRKRCSISDVGFLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASEAFLKLTGYVKDEVLGRNCRFLSGPNTDASALYLIRESIKAEQPCTVHILNYRKDESPFWNFLHISPIRDASGKVVRDQIAYFVGVQVEEGCENKEGRQGLSPERIQLSVVGAVRVAVRSSSLTAGSSKSL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2304g00027 410 Pfam PAS domain 32 131 IPR000014 -
Pral2304g00027 410 Pfam PAS domain 262 356 IPR000014 -
Pral2304g00027 410 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 356 IPR035965 -
Pral2304g00027 410 Gene3D PAS domain 17 141 - -
Pral2304g00027 410 ProSiteProfiles PAS repeat profile. 275 321 IPR000014 -
Pral2304g00027 410 PANTHER PROTEIN TWIN LOV 1 6 399 - -
Pral2304g00027 410 CDD PAS 271 356 IPR000014 -
Pral2304g00027 410 CDD PAS 27 130 IPR000014 -
Pral2304g00027 410 SMART pas_2 18 87 IPR000014 -
Pral2304g00027 410 SMART pas_2 250 319 IPR000014 -
Pral2304g00027 410 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Pral2304g00027 410 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Pral2304g00027 410 SMART pac_2 325 358 IPR001610 -
Pral2304g00027 410 SMART pac_2 93 136 IPR001610 -
Pral2304g00027 410 NCBIfam PAS domain S-box protein 275 354 IPR000014 -
Pral2304g00027 410 NCBIfam PAS domain S-box protein 21 128 IPR000014 -
Pral2304g00027 410 Gene3D PAS domain 262 407 - -
Pral2304g00027 410 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2304g00027 Pral-Chr2304 213022 216893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2304g00027 15 397 AGC Kinase Gene Family AT5G58140 29.639 5.69e-55 193