Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2298g00007 ATGACGGGGTTGGCAACAACTTCTTCCTCTTTCAGTTACCAATGGACTTATGATGTCTTTATCAATTTTCGAGGCGAAGATACTCGTCATGGTTTTACAGGAAATCTGTATAATGCTTTAAAACATGCGGGAGTCCGCACCTTTCTTGATGATGAGGAATTAAGAAGAGGGGATGAAATTACCCCATCTCTTCTTAGAGCAATTGAAAATTCTAGGATGGCCATAACTGTATTTTCTAAGAACTATGCTTCATCCACATTTTGTCTCAACGAACTTGTTATGATTCACCAGTGCATTAAGAAAAAGGATCGGTTGGTTTTGCCAATTTTTTATGATATAGAGCCTTCAGAAGTGCGACATCAAAAAGAAAATTATGAACAAGCAATATCCATGCATATGGAAAACCTCAGGGCTGGTGGGGAGACGATCCAAAGTTGGAAGGTCGCATTACGTGAAGTGTCTAATATTTCTGGCTTCCATTTTAATCCGAACCAAGGTTGTTATGAATATCGATTCATTGATGGCATTGTGAAAGAAGTCTCCAGCAAAATTAATCGAGTTCCTTTACATGTTGCTGCATGTCCTGTTGGGTTAGAGTCCCGAGTGCCAGCTGTCAACTCTCTATTACAGATTGAGTCAAATGACAGGGTCACCATGGTTGGAATTTGTGGAACTGGGGGAATTGGTAAAACAACAATAGCACGTGCTGTGTATAATTCAGTTGCTGATAATTTTGATGGTTTGTGCTTTCTCCTTGATGTCCGAGAAAAATCAAGGAAAATTGGCCTAGAACAAATTCAAGAGACAATGCTTTCAAAGATTGTAGGAGTGGACATCAAAATACAAGATGTTAATGAAGGAGTTGAAGTAATAAAAAGAAGACTCAAACAAAAGAAAATTCTTTTGATTCTTGATAATGTTGACAGACATGAGCAATTGGAAAATTTAGCTGGTGATTGCAGTTGGTTTGGTGATGGGAGCAGGATCATTATAACGACAAGGGATAGACATTTACTTGTAAGACATGGGGTTGAAAGCATATACAACATGGAGGCTTTCAACGTTCATGAATCTCTTGAATTGTTGACTTGGAATGCTTTTAGAGACAACCAAGCAAATCCAAGTCACATGGGGGTGTTGAAGCGGGCAGTAAAATATGCACAAGGCCTTCCACTAGCCCTTCAAGTAATAGGTTCCAACTTGCATGGAAAGAGCACAGAAGAGTGGACATCTATGTTAGATGGATATAAATCAATCCCTAATGAAAACATTCAACAAGTATTGAAGGTAAGCTATGTGGCCCTGGAACCAGTTGAGAAAGAAATATTTCTTGATATTGCTTGTTTTTACAGAGGGAAACGTTTGAAATATGTCAAACATATGGTGGAAGTAGCTCATGGCTCCAATAATTTAAGTTATTTTATTGGAGTGTTAGTAGATAAATGCCTCATAAATATTGAAAATGATTGCATCCAAATGCATGATTTGATACAAGACATGGGGAGAGAAATTGTTCGTGAGGAATCACCAAATAACCCAGGAAAACGGAGTAGACTATGGTTTCATCAAGATATTGTTGATGTTTTGGAAGACAATACAGTAAGTAACATTTAG 1614 0.3792 MTGLATTSSSFSYQWTYDVFINFRGEDTRHGFTGNLYNALKHAGVRTFLDDEELRRGDEITPSLLRAIENSRMAITVFSKNYASSTFCLNELVMIHQCIKKKDRLVLPIFYDIEPSEVRHQKENYEQAISMHMENLRAGGETIQSWKVALREVSNISGFHFNPNQGCYEYRFIDGIVKEVSSKINRVPLHVAACPVGLESRVPAVNSLLQIESNDRVTMVGICGTGGIGKTTIARAVYNSVADNFDGLCFLLDVREKSRKIGLEQIQETMLSKIVGVDIKIQDVNEGVEVIKRRLKQKKILLILDNVDRHEQLENLAGDCSWFGDGSRIIITTRDRHLLVRHGVESIYNMEAFNVHESLELLTWNAFRDNQANPSHMGVLKRAVKYAQGLPLALQVIGSNLHGKSTEEWTSMLDGYKSIPNENIQQVLKVSYVALEPVEKEIFLDIACFYRGKRLKYVKHMVEVAHGSNNLSYFIGVLVDKCLINIENDCIQMHDLIQDMGREIVREESPNNPGKRSRLWFHQDIVDVLEDNTVSNI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2298g00007 537 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 186 - -
Pral2298g00007 537 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Pral2298g00007 537 Pfam NB-ARC domain 205 422 IPR002182 GO:0043531
Pral2298g00007 537 Pfam TIR domain 17 185 IPR000157 GO:0007165
Pral2298g00007 537 Gene3D - 13 185 IPR035897 -
Pral2298g00007 537 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Pral2298g00007 537 PRINTS Disease resistance protein signature 294 308 - -
Pral2298g00007 537 PRINTS Disease resistance protein signature 219 234 - -
Pral2298g00007 537 PRINTS Disease resistance protein signature 387 401 - -
Pral2298g00007 537 Gene3D - 186 347 IPR027417 -
Pral2298g00007 537 SMART till_3 16 156 IPR000157 GO:0007165
Pral2298g00007 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 530 IPR044974 GO:0006952
Pral2298g00007 537 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 159 IPR035897 -
Pral2298g00007 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Pral2298g00007 537 Gene3D - 353 436 IPR042197 -
Pral2298g00007 537 SMART AAA_5 216 354 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2298g00007 Pral-Chr2298 58863 60630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2298g00007 11 520 WRKY Transcription Factor Family AT4G12020 29.446 1.47e-53 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2298g00007 - - pcin:129292875 674.085