LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2291g00008	ATGGGTAGTACCAATAGTCGACACGTTTCTCGGCCTTCTTCTCGGCGAGTCAACCACACCAAACGCTTCAGTCTTTCCTCTCTTCTTCCCTGCGGTGCATCTACTTCTCGCGCTACTTATGAGATTGAAGATCATCCAACTGAACTTCTAGTAGACTCTGCTACAGACTTTAATGATCAAGTTCAGAAAGTTACAGAGGAATCGTCTTTATCACATTCAACAGAAGCTGGAATTAGCCGCTCACATGCTCAAACTGGAACCTCCTTTGGCAGCAGTATTCAATCCTGTGAGAATGCTAATCTTCAAGATTCTTCCAGAAGTGTTGCAACCAGCAATCAGAGGGAGTGTTTGTTTAAAAGAAAGGAGTTAGTTCCTCCTTATGAGGTGAGTACTGATCATAGTTATAATGAATCTTATAGGGATAGCAGCGACACAGCTAGTCCTTCATTTGTAGAACAAAAGTCTTCAGATCCAGTCTCTGTAAATAGTTCTGCTAACAAGGATGCAGTTAATAATATTGATAATTTAGAGGATAGTAGTATCCGTCCAATATCTCATGAGACATTGCATCTAAGGAGTTCATCCCCTCAAGTGTTTGAAGACTCCGGTTCTCATGAACATTATGTCGAGAGTCATAGCAGTGCAGCTATAGCTTCCCAGAATTCTGATTCAAGTCCCAGTTCTCAAGGTGCAGATCTGCCAGTAACTTCTCTGTTGCAAGAAAATGAATCTCACGAAGAAACAATTCCTCCAAGTTTAGGGTTTCTTGTTCCCGACCGGGAAAGAGGACATGTGAATGAGGGTGTGCTTCATGTTGACGTGGTTACTATATCTTCCAATACTTTGTCTTATAGCAACACTGATGCCATTGATCGTAGTACCAGGAGAAATGGTAGGAGACCATTTTGGGATGCTTTTTCAAATCGTAGTTCGAGAAGGTTTCGTATTTCTCCAACCATTGTCTTCTCAGCTGGTGATCCTGATGATATAGCATCTCAAGACCAATGGTTTCTTGATTTGAGCAGTGGTTTCTCAAATGATGAGGTTGGAGAGGATTTTGAATATCTTGGCAGTAGAATCCGCAGATCTAATGCACGAATGCTGCACTCAAGATCCCAGATCTGGGAAAGACTTCGTGACGGCCTTAATGAAACAGATCGGTGGACTAATTCTTGTCCATTAGGACTCCACCCTGATGGCAGGTGTTTCTGTGAGCCTTTCTCCATGACTGAGGAATCTAATACTCGAGCTAGCATGTCAAGAATAGTCATGCTTGCAGAAGCTTTATTTGAGTTTTTAGATGAAGTTCATCGCCAACCCACGCCATTTTCACTATCTGTGGCCTCTCTCCCAGCGCCAGAGTCAGTTGTTGATGCTTTCCCTCTGAAGTGTCACAAAACGGTTGGCACAGCTGATGGTGTTAGTAATACTGAACAATGCCATATATGCCTGGTGGAGTATGAAGAAGGGGACAAAATTCGTGTTCTGCCTTGCAATCATGAATTCCACATGGCATGCGTTGATAAGTGGCTTAAGGAAATACATGGTATATGTCCTCTCTGTCGTGGGAATGTTTGTGGAGGAGGGTTCACCGGGTCTTCTGCTTCAAACACGGAAGTGGCCTAA	1626	0.4323	MGSTNSRHVSRPSSRRVNHTKRFSLSSLLPCGASTSRATYEIEDHPTELLVDSATDFNDQVQKVTEESSLSHSTEAGISRSHAQTGTSFGSSIQSCENANLQDSSRSVATSNQRECLFKRKELVPPYEVSTDHSYNESYRDSSDTASPSFVEQKSSDPVSVNSSANKDAVNNIDNLEDSSIRPISHETLHLRSSSPQVFEDSGSHEHYVESHSSAAIASQNSDSSPSSQGADLPVTSLLQENESHEETIPPSLGFLVPDRERGHVNEGVLHVDVVTISSNTLSYSNTDAIDRSTRRNGRRPFWDAFSNRSSRRFRISPTIVFSAGDPDDIASQDQWFLDLSSGFSNDEVGEDFEYLGSRIRRSNARMLHSRSQIWERLRDGLNETDRWTNSCPLGLHPDGRCFCEPFSMTEESNTRASMSRIVMLAEALFEFLDEVHRQPTPFSLSVASLPAPESVVDAFPLKCHKTVGTADGVSNTEQCHICLVEYEEGDKIRVLPCNHEFHMACVDKWLKEIHGICPLCRGNVCGGGFTGSSASNTEVA	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2291g00008	541	FunFam	Putative RING zinc finger domain superfamily protein	447	527	-	-
	Pral2291g00008	541	ProSiteProfiles	Zinc finger RING-type profile.	480	522	IPR001841	-
	Pral2291g00008	541	SUPERFAMILY	RING/U-box	474	525	-	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	64	92	-	-
	Pral2291g00008	541	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	445	526	IPR013083	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	128	179	-	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	1	21	-	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	192	233	-	-
	Pral2291g00008	541	Pfam	Ring finger domain	479	522	IPR001841	-
	Pral2291g00008	541	SMART	ring_2	480	521	IPR001841	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	140	179	-	-
	Pral2291g00008	541	PANTHER	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	1	540	-	-
	Pral2291g00008	541	MobiDBLite	consensus disorder prediction	213	233	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2291g00008	Pral-Chr2291	80303	85639	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2291g00008	391	526	C3H Transcription Factor Family	AT5G45290	52.318	1.28e-41	155