Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2286g00001 AAAAAGGAGTTGAAGTTTCCAGGTTTGGTGAGCATGACGGCGACGTTTCGATGCGTACGAGTGCGATCAAATGATGACTGGGTGAATGAATTAGCGTACCATGCGTCGGTGAGGATTGGAGGGCATGTGTTTTGCGGTCTTCTTCATGATCAAGGCCCTTCTCTTGCTCAGACTTCCTCAGTCCCTCTTCTTCAGCATAACAATCTAATCAACGTAGCAACACAGACGACCCATAATATTGATGCCGCAACAATGGCTCCTCCATTATCATCTTCTTCTGCTCGTGACTCTATCTTTCATCCAACATACCCTTTTCCCCTACCACCTTCTATGCCTTATTTCTCCAACCCCCAACCGTAA 360 0.4667 KKELKFPGLVSMTATFRCVRVRSNDDWVNELAYHASVRIGGHVFCGLLHDQGPSLAQTSSVPLLQHNNLINVATQTTHNIDAATMAPPLSSSSARDSIFHPTYPFPLPPSMPYFSNPQP 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2286g00001 119 Pfam Domain of unknown function (DUF702) 4 53 - -
Pral2286g00001 119 NCBIfam LRP1 C-terminal domain 5 53 IPR006511 -
Pral2286g00001 119 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 5 106 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2286g00001 Pral-Chr2286 255 616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2286g00001 6 73 C2H2 Transcription Factor Family AT5G66350 52.941 1.29e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral2286g00001 DUF702 3.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2286g00001 - - pcin:129285032 159.073