Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2284g00011 ATGGCAGAAAAACATACTGAGTCAATCCGCCCGGGAATCACAGGCAGCTCCTCTCATCTTGCTTCCACGTGCGGCAATGATTTTGTTGAGCTGGTTTGGGAAAATGGCCAAATCCTGGTGCAAAGAGGGTCATCGAGCAGGACACCGAAGAGGCCTTCTTGCTTTGGTTATTCCATAAACCCTCACATGACGCTTACGACCAAGATCACGATTAATTTCTCCAACTTCCTGAGACCTGCATTGTTTTCCAAATCTACTTATCAGGGAAATAGTGCAAGTGGGCATCCAAACAGTGGCGTTTCGGCTAGGGTGGAGGAGATCAAAGCAACTGATGGTGGCAGTAGCAAAGCTCTTGATCATTCCGTTGTGATTGACTCGGCTAAGGGATCACATAGTCCCAACGGAATTCATCCTGGCCAAGCAGCTTTTACTTCTAACAAAGCAAGCTCACCGACACCCTTTGATGGAAAAAAGGATCAGGAAACACTCCCTGATGAACAATCCGAAGCTGTTGGGTGCGATAGGGCCCTCAAGAGTCACGGATCACATGGTCAATATCATCATCGCCAAACACACAGTAGAAAAGGAAAAACAGCCGCTGAGTTTTCTGATGCACCCTTGGTAGCATCTTCTTCTTTGTGCTCTCTTGGAGCCTCGAATGACCCTACTATTCGTAGTACGAAACACGAGGACACCGACGATTCAGCCTATACAACTGACAATGATGAAGAAACAGAAGATACGACAACAAAGGAAACGCCGGCTCAAGATGGTTCAAGAGGCAAGAGAATCAGGAATACGAAGATGCATAATTTATCGGAGAGGAAGAGACGAGATAAGATTAACAAGAAGATGCGTGCATTAAAACAGCTAATACCTAATTGCAATAAGATGGACAAGGCTTCAATGCTGGACGACGCCATCGATTATCTGAAGACCCTCAAGCTTCAGTTGCAGGTATTGTCAATGGGAAGTGGGGTTTGTATGCCTCCAATGATGTCGATGTTAGCAGCAGGAGGTTGTGGGCAGCAGTTAGGCTTAGGCATCCCTTGCAGCCTCCCTCACCATCAGTTTGCAGGTGGCAGTATTCTTCCACAGCTCCCTCCTCACCTTCACAATAGTCTTCAAATGCTTCCTGGTTTCCCCAGTCATGTGCTTCCCAATATTCAATTCCCAATTTCCCAACAGTCACCTTTCATTTCCATGCCCCCCAAGCCTATCCAACCCTACCTCTCTTCCCACCTAACCACATTTGATCGCGACCCTGACCTTAATGCACAGCTTGTTTCAGCCGCACCTATGCCAAAAGTTGCTCAGGGATCAAATCCAAGTTGA 1335 0.4712 MAEKHTESIRPGITGSSSHLASTCGNDFVELVWENGQILVQRGSSSRTPKRPSCFGYSINPHMTLTTKITINFSNFLRPALFSKSTYQGNSASGHPNSGVSARVEEIKATDGGSSKALDHSVVIDSAKGSHSPNGIHPGQAAFTSNKASSPTPFDGKKDQETLPDEQSEAVGCDRALKSHGSHGQYHHRQTHSRKGKTAAEFSDAPLVASSSLCSLGASNDPTIRSTKHEDTDDSAYTTDNDEETEDTTTKETPAQDGSRGKRIRNTKMHNLSERKRRDKINKKMRALKQLIPNCNKMDKASMLDDAIDYLKTLKLQLQVLSMGSGVCMPPMMSMLAAGGCGQQLGLGIPCSLPHHQFAGGSILPQLPPHLHNSLQMLPGFPSHVLPNIQFPISQQSPFISMPPKPIQPYLSSHLTTFDRDPDLNAQLVSAAPMPKVAQGSNPS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2284g00011 444 PANTHER TRANSCRIPTION FACTOR PIF3 1 57 IPR044273 GO:0003700|GO:0006355
Pral2284g00011 444 Gene3D - 261 322 IPR036638 GO:0046983
Pral2284g00011 444 MobiDBLite consensus disorder prediction 126 199 - -
Pral2284g00011 444 MobiDBLite consensus disorder prediction 1 20 - -
Pral2284g00011 444 CDD bHLH_AtPIF_like 265 326 IPR047265 -
Pral2284g00011 444 MobiDBLite consensus disorder prediction 248 278 - -
Pral2284g00011 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Pral2284g00011 444 MobiDBLite consensus disorder prediction 137 156 - -
Pral2284g00011 444 Pfam Helix-loop-helix DNA-binding domain 268 314 IPR011598 GO:0046983
Pral2284g00011 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 325 IPR036638 GO:0046983
Pral2284g00011 444 MobiDBLite consensus disorder prediction 217 279 - -
Pral2284g00011 444 SMART finulus 271 320 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2284g00011 Pral-Chr2284 39767 42774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2284g00011 52 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 31.818 8.14e-33 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2284g00011 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2284g00011 K12126 - pcin:129304463 571.622