Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2284g00009 ATGGGGGGGCACTCTTGCTGCTATAAGCAGAAGCTTCGGAAGGGTCTATGGTCCCCTGAGGAGGATGAAAAACTTTTGAGACATATTAATAAGCATGGCCATGGCTGTTGGAGCTCTGTTCCTAAGCAAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTAGGCTGAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGGGGAACGTTCTCACAGGAAGAAGAAAACCTTATAATTGAACTTCACGCAGTATTGGGAAATAGATGGTCTCAAATTGCGGCGCAATTGCCCGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTGAGGCAAAGAGGCATCGACCCTGTTACCCACAAACTACTCTCTGAGGTTCAGAATGGAGACGACAAAGAGAAGGAGCTCAATGAATTGAAAGTCCTCAAATCAGAGAGCCCAAGTTCAGATGCCACAAAAGCATATACACCCACTATGGAAGGGTGTTCCAGTTTCAAGTATAACAATAGCACAAGTAACACCAATTTGCCAACCAACTGTAGCAGCAAAGAATTGCTTCCAGGTGGGTTTAATACGAGCCACACCACTTCAGGACTGATGGGAAATTTCCCACTTCAGATGAATTATGCATCCACTGGTGATACCTTCTTTGCCAATTCAAACCCTTCTTCCCAATGGTTCACCCAAACAGGAAGACCAACATTCAATATGAACCCTGAATTTGCCTCCAATTCCATGTCCACCGTTCTTGCGCCTCCACCCACTTCATTTCTTGGTGTTCCCTGCGATGATGTTTGTGCAGCCTCTTGCGCTGAGAATGCATCGCAATCTCATTTCTGGGGATTGACAGATTCCGAAAAAGAGACCCAAATTCAAGTGCTGCAAAGCCAAACAGAGGAAGCCAAGTGGGGGGATTACGTCCAAAACCCAATCTTGATGGTGCCCGTGACTCATCTGGTGTCTGATAATTTGGGACTCATGTTACCCCATAGCAAGCCGCAAGAAGAACCCTCACAGACTTGTAATATGTTTTCCAAGGACATCCAGAGGCTCACGGCTGCATTTGGACATATATAG 1095 0.4603 MGGHSCCYKQKLRKGLWSPEEDEKLLRHINKHGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKLLSEVQNGDDKEKELNELKVLKSESPSSDATKAYTPTMEGCSSFKYNNSTSNTNLPTNCSSKELLPGGFNTSHTTSGLMGNFPLQMNYASTGDTFFANSNPSSQWFTQTGRPTFNMNPEFASNSMSTVLAPPPTSFLGVPCDDVCAASCAENASQSHFWGLTDSEKETQIQVLQSQTEEAKWGDYVQNPILMVPVTHLVSDNLGLMLPHSKPQEEPSQTCNMFSKDIQRLTAAFGHI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2284g00009 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral2284g00009 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral2284g00009 364 PANTHER MYB DOMAIN PROTEIN 55 1 274 - -
Pral2284g00009 364 FunFam MYB transcription factor 68 140 - -
Pral2284g00009 364 CDD SANT 17 61 IPR001005 -
Pral2284g00009 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral2284g00009 364 SMART sant 13 63 IPR001005 -
Pral2284g00009 364 SMART sant 66 114 IPR001005 -
Pral2284g00009 364 Gene3D - 11 67 - -
Pral2284g00009 364 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral2284g00009 364 CDD SANT 69 109 IPR001005 -
Pral2284g00009 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2284g00009 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral2284g00009 364 Gene3D - 68 146 - -
Pral2284g00009 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral2284g00009 364 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2284g00009 Pral-Chr2284 22850 24353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2284g00009 1 238 MYB Transcription Factor Family AT4G01680 62.343 5.97e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2284g00009 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2284g00009 K09422 - gmx:100782199 420.624