Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2278g00009 ATGGGTGAGGAATTTCAAGCTGGGATTTGTGGTGGGAATAATTACTGGTGGATCAATAACAACATGATGATGAACTCAACAACGCGAAGTGTTTTCCCTTCGATGCTGAGTTCATCTCCGTGTTCTGTGCTCACAGCTAACCACGATCTTTCTGGAGGAGGCGGAGGTATGATTGGCTACAGCACATGGCAGACGGATACGGTGGACTTGAAGGCCCCAGACACCGCGGAGGCGACGGCGCCGGCCACCTCTCTGGGGTTTCTCGATGCAACCACGACGACGAAGCCACTGCTTCAGAATCATCATCATCATCATCATCATCAGACTGCAGAACCTGATATTGCAGACAATCATCATAATAATGGTTCTATCTTGATGGATTCCTCTTCTTTGGAAATGATCATGGGTTGGAATCATTCTCTCTTCGGCAATTCTGTATCACAAAGCCAAGATCAGAAGAGAGAGATGTCGATGAAGAATCAAGATTTATGTGGTGGTGGTAATTTCTCAGTTGGGTCAGTTCCAGTTTCTTCAAGTTCGACGTTGATTCAAAGTTTGTATGATATTCCTCAAGCAGCACAGTCACTTTTCACCAACCCTCCTATACCACAATCATCTTCCATGGCCTATTCTTCAAGTACATCAAATAATTATGGCGCAATATCTAATTCCACTGATCAATTCATGCCTTCACCAACTACTACTACTACTACTTCGTCTTCTTCTTCTTCTTCTTCTTGGTCCAGACCCTCTAATAATAACAATCCCTTCTTGAAGTCTAGTGGTGGTGGCTTGCACTTTTCTAACTGTACTCCTTTCTGGAATGCTTCTGCTGAAACAACACCCCATGTTTTTGCTCCTTTAATTACTGAGAAACCCAATTTCACAAGCTCTCTCGTACCCAAGCCCAAGAGAGAAGAAGTTTCGGAGTCGGCAAAGAAAGGTTCGTGTGAACCTGCAATCAAGAAGCAAAGGATTGAAACCCCATCGCCATTACCAACTTTCAAGGTTCGGAAAGAGAAGCTAGGGGACCGAATCACTGCTCTTCAGCAATTGGTGTCGCCTTTCGGAAAGACTGACACTGCATCTGTTCTTCACGAAGCCATCGACTACATCAAGTTCCTGCATGAACAAGTTTTGAGCACTCCTTACATGAAAAATGGAGTTCCCATCCAACACTGCCAGCAGGGTTGTGAAGTGAAGGAGTCATCGGAAGGGCCAAAACAAGACTTGAAAAGCCGAGGGCTGTGTTTGGTTCCTATTTCAAGCACATTCCCAGTGACAAACGAAACACCTGTGGATTTCTGGACGCCGTCATTTGGAGGGACACTCATCAGATAA 1341 0.4512 MGEEFQAGICGGNNYWWINNNMMMNSTTRSVFPSMLSSSPCSVLTANHDLSGGGGGMIGYSTWQTDTVDLKAPDTAEATAPATSLGFLDATTTTKPLLQNHHHHHHHQTAEPDIADNHHNNGSILMDSSSLEMIMGWNHSLFGNSVSQSQDQKREMSMKNQDLCGGGNFSVGSVPVSSSSTLIQSLYDIPQAAQSLFTNPPIPQSSSMAYSSSTSNNYGAISNSTDQFMPSPTTTTTTSSSSSSSSWSRPSNNNNPFLKSSGGGLHFSNCTPFWNASAETTPHVFAPLITEKPNFTSSLVPKPKREEVSESAKKGSCEPAIKKQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHEQVLSTPYMKNGVPIQHCQQGCEVKESSEGPKQDLKSRGLCLVPISSTFPVTNETPVDFWTPSFGGTLIR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2278g00009 446 Gene3D - 336 382 IPR036638 GO:0046983
Pral2278g00009 446 FunFam Transcription factor bHLH123 family 336 396 - -
Pral2278g00009 446 MobiDBLite consensus disorder prediction 221 259 - -
Pral2278g00009 446 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 154 426 - -
Pral2278g00009 446 SMART finulus 337 381 IPR011598 GO:0046983
Pral2278g00009 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Pral2278g00009 446 MobiDBLite consensus disorder prediction 99 122 - -
Pral2278g00009 446 MobiDBLite consensus disorder prediction 303 321 - -
Pral2278g00009 446 CDD bHLH_AtbHLH_like 332 379 IPR045239 -
Pral2278g00009 446 MobiDBLite consensus disorder prediction 295 325 - -
Pral2278g00009 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2278g00009 Pral-Chr2278 150702 155253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2278g00009 230 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 50.435 1.32e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2278g00009 - - pcin:129287171 545.428