Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2278g00001 ATGAAGCTCCTTCTGGCTAAAGAGCTAACTCTGATCAATATTCCACATTTCCTAATTCTCTTCCTCTTCTCTTCTTCTTGTCACTCCCTAAACAGAATAACCCCAGGCAAGCCTCTTAAAAACGGCGACGTTTTGGTCTCCGACGGAACAACCTTTGCCCTTGGTTTCTTCACACCCGACGAAAATTCCAAAAACAGCTTCGTCGGAATCTGGTACAACCAAGTTTCAGAGCGAACCCTTGTCTGGGTTGCCAACAGAGGCAACCCTCTTAATGATACTTCTGGAATTCTCTCAATCGACATTCATGGGAACATCGTTCTTGTTGCCAACCATACGAATCCAAATCCCATTTGGTCTTCCAATGTTTCACTCTCGTCGTCATCATCTCCCACTAAGACCTTCGCGAAGCTTCTAGACACAGGAAACTTGGTTTTGGTCGAAAATAATGGCACAAGTAAGGTTCTTTGGCAGAGTTTTGATTATCCCTGCGACACCATGCTTCCGCTTATGAAACTCGGATTGGATAAGAAGACCGGATTGAAAAGATTCCTCACCTCATGGAAATCCCTTGACGACCCGAGACCCGGAAGCATGAGCTATAAGATCGACCCGAGAGGCTATCCTCAGTTCTTCGTCTACAAAAACGAGGACCCAATCTATCGGGCTGGGTCTTGGACGGGTCAAAGATGGGGCGGAATACCCGAGATGATCCCAAACTATTTCATCTTCAACGTTAGCTTCGTGGATGATGCAAATGAAACGAGCATAATGTACAGTCTCAACGATCCTTCAGCGTTATCAAGAATGGTTCTTGATAATTCGGGTCACTTGAGCCGATACACGTGGCAACCCGAAGGCCATAGATGGCAGGAAATCCTACACATTCCAAGAGATAACTGTGACCATTATCGGCGATGCGGGTCCAATAGTTACTGTGACTCGTATTATGTTGTTGCAGACAAGTTTCAATGTGTGTGCTTGCCTGGATTTGAATCCGAAAACCCAGAAATGAGAAAGGGGTCGGGTGGTGGGTGCGTGAGGAAGAAGGATGTGTCCACGTGTCAAAGTGGGGAGGGGTTTGTGAAAGTGCCACGTGCGAAACTACCAGATACATCAAAGGTAGAGTTGGATGATAAGAGCATTGGCATGAGCTCGGAAGAATGTAAAGAGAAGTGTGCGAAGGATTGTTCATGTGAAGCATTTGCGAGTGCAAATGAGGTCACTCTGAGAGGCTGCCTGACGTGGCATGCTGACATGGAAGACATTAGGATATTTAATAGTGTGGGTCAAGATTTGTATGTTCGTGTGGATGCAGTTGAATTAGCTAAATATGAAAACAAGCCTCATAGTTCTCTTGGCAAGAAGGGGATGGGCGCACTAGTCGTTTCTGTTTGCCTCTTAATGTTGGTGATCACTTTTGTGTATTGGTTTGCAAAGAAGAAGAAACAAGCGAGAAGAAGGCTTGATGGATATTTAGTTGATAGAGGAAATGGTTCGGATTTATCATTGTTCGATCTAAGTGATATAATTGCAGCAACTGAGAATTTCTCTGATGCTAACAAGCTTGGACATGGTGGTTTTGGTTCAGTTTATAAGGGTATACTGCAAAATGGAATGACTGTAGCAGTGAAGAGGCTATCACAGCATTCTGGACGAGGCACTAAAGAGTTCAAAAATGAAGCTACTTTAATGGCAAAGCTCCAACATAGAAATCTTGTAAAGATTTTAGGTTATTGCATACAAGGAAAAGAGAGGATATTGATCTATGAATATTTGCCAAATAAAAGTTTGGACATTTTCATTTTTGAGGAATCTTATACCTTCACCATGATTCAAGATTAA 1842 0.4338 MKLLLAKELTLINIPHFLILFLFSSSCHSLNRITPGKPLKNGDVLVSDGTTFALGFFTPDENSKNSFVGIWYNQVSERTLVWVANRGNPLNDTSGILSIDIHGNIVLVANHTNPNPIWSSNVSLSSSSSPTKTFAKLLDTGNLVLVENNGTSKVLWQSFDYPCDTMLPLMKLGLDKKTGLKRFLTSWKSLDDPRPGSMSYKIDPRGYPQFFVYKNEDPIYRAGSWTGQRWGGIPEMIPNYFIFNVSFVDDANETSIMYSLNDPSALSRMVLDNSGHLSRYTWQPEGHRWQEILHIPRDNCDHYRRCGSNSYCDSYYVVADKFQCVCLPGFESENPEMRKGSGGGCVRKKDVSTCQSGEGFVKVPRAKLPDTSKVELDDKSIGMSSEECKEKCAKDCSCEAFASANEVTLRGCLTWHADMEDIRIFNSVGQDLYVRVDAVELAKYENKPHSSLGKKGMGALVVSVCLLMLVITFVYWFAKKKKQARRRLDGYLVDRGNGSDLSLFDLSDIIAATENFSDANKLGHGGFGSVYKGILQNGMTVAVKRLSQHSGRGTKEFKNEATLMAKLQHRNLVKILGYCIQGKERILIYEYLPNKSLDIFIFEESYTFTMIQD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2278g00001 613 SMART blect_4 36 162 IPR001480 -
Pral2278g00001 613 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Pral2278g00001 613 ProSiteProfiles PAN/Apple domain profile. 354 437 IPR003609 -
Pral2278g00001 613 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Pral2278g00001 613 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 193 IPR036426 -
Pral2278g00001 613 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 601 - -
Pral2278g00001 613 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 480 591 - -
Pral2278g00001 613 Pfam D-mannose binding lectin 79 188 IPR001480 -
Pral2278g00001 613 CDD B_lectin 38 162 IPR001480 -
Pral2278g00001 613 ProSiteProfiles Protein kinase domain profile. 516 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2278g00001 613 ProSiteProfiles EGF-like domain profile. 296 336 IPR000742 -
Pral2278g00001 613 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 159 - -
Pral2278g00001 613 Pfam Protein tyrosine and serine/threonine kinase 520 604 IPR001245 GO:0004672|GO:0006468
Pral2278g00001 613 CDD PAN_AP_plant 352 436 - -
Pral2278g00001 613 SMART ntp_6 355 436 IPR003609 -
Pral2278g00001 613 SUPERFAMILY Protein kinase-like (PK-like) 501 610 IPR011009 -
Pral2278g00001 613 Pfam PAN-like domain 354 422 IPR003609 -
Pral2278g00001 613 ProSiteProfiles Bulb-type lectin domain profile. 30 158 IPR001480 -
Pral2278g00001 613 Gene3D - 26 159 IPR036426 -
Pral2278g00001 613 Gene3D Phosphorylase Kinase; domain 1 479 591 - -
Pral2278g00001 613 Pfam S-locus glycoprotein domain 220 333 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2278g00001 Pral-Chr2278 28209 31271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2278g00001 459 604 Receptor kinase-like Gene Family AT4G04500 52.055 1.47e-39 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral2278g00001 S_locus_glycop 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2278g00001 - - pcin:129284814 736.102