Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2263g00001 ATGGCGAATCAGGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACAAGTTGTTCAGGGAGGCCACCACTATATCTGAATGCCTGCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTGGAATGCTGTCCAATATGCAATATTGATTTGGGCTGTGTTCCGCTGGAGAAATTGAGGCCAGACCATAGTTGGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGAAAACAAAGGCAAAGGCACCAGAAGTTGTCCCCTCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCATCTTTGGTTGTCAGCACCCCCAGAGTATCAACACAGGCAACCATGACAGGCAGAAGAACAAAGCCTACAAGGAAGGCTAGTGCTTTACGCTCCACTAGTTTTTCCATTGAAAAACCCATTGTAAAAGAGGAAGATTCAATCGAAGATCATCCAGAGAGTTCAAGCTCCCATGATACCTCCAACAAGGTTACTCAGACTACTAGACAGAACTCGTCCCCTCATGATGCAAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGCTGAACATTGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTGGTGGAGGTTGCAAGTAGAAGTAAATCTCTCAAGTCCAACATGCAAGGATGTGATGCTAAACAAGAACCTATTCAAATAAATGAGAATGATTCTCAAATACAAAAATCCAAAATTAAGGACATCAAACGAAAGTCAAAAGTTGAGGATGAAAAGATCGTCACAGATCCTGCTTCTACAGATACAGCAAAAGCCAATAAATTGCGTAGAAATCGCCGAAAAAAAGAACCTGTTGTGGGTGAATCAAGCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGGTCCAATATGGTTCTCCTTAGTAGCTTCCGATGACCAGGACAGAGATGCACCACTACCTCAAATTCCTGCAAGTTACTTGAGAATAAAGGATGGAAACATGCCTGTCTCATTCATCCAGAAGTACCTAATGAAAAAATTAGATCTGACCAGTGAAGATGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACATTGCAACTAAATAACTTGGTTGACTTGTGGCTGCAAACAACATCAACATCACAGAGAATCCCAGCAGCCATTGGATCATCAGCAAAAGATTTTGTTATGGTCCTGACCTATGCTCGCAAGGCCCCGCCTCCTTGA 1290 0.4233 MANQVVKVKRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSWQDVRAKIFPLKKTKAKAPEVVPSEPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASALRSTSFSIEKPIVKEEDSIEDHPESSSSHDTSNKVTQTTRQNSSPHDASQSVPNKEKNNGAEHWEAKLDLWKPLNCLVEVASRSKSLKSNMQGCDAKQEPIQINENDSQIQKSKIKDIKRKSKVEDEKIVTDPASTDTAKANKLRRNRRKKEPVVGESSISPQAVLDANSAKMKERTGPIWFSLVASDDQDRDAPLPQIPASYLRIKDGNMPVSFIQKYLMKKLDLTSEDEVEIKCMGQPVVPTLQLNNLVDLWLQTTSTSQRIPAAIGSSAKDFVMVLTYARKAPPP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2263g00001 429 MobiDBLite consensus disorder prediction 150 169 - -
Pral2263g00001 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Pral2263g00001 429 SMART ring_2 19 59 IPR001841 -
Pral2263g00001 429 MobiDBLite consensus disorder prediction 112 147 - -
Pral2263g00001 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pral2263g00001 429 MobiDBLite consensus disorder prediction 277 299 - -
Pral2263g00001 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pral2263g00001 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pral2263g00001 429 MobiDBLite consensus disorder prediction 170 198 - -
Pral2263g00001 429 CDD RING-HC_PCGF 17 60 - -
Pral2263g00001 429 MobiDBLite consensus disorder prediction 93 201 - -
Pral2263g00001 429 SUPERFAMILY RING/U-box 14 80 - -
Pral2263g00001 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2263g00001 Pral-Chr2263 2578 8617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2263g00001 2 348 C3H Transcription Factor Family AT2G30580 54.023 3.15e-112 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2263g00001 K16277 - gmx:100793731 652.129