Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2247g00004 ATGCCTGTGTTGTTCTCTGCACGGTTGGTTCTGCTAGCTGGAGAGACATTGCCCTTGCGAAGGTTCCTGCCCAATTCTGGTACTTCTTGTTTGCATAGCTGTGTCCGTTCTCTAAGTCAGCTAGAGCCCCAGCATGCTCCCCTTACTCCCTTAAGCATCGATTTGAATAATGAAAATGAAACTAGGAAGAATAACAAAGTCAATAAACTGAAGCAATTGGGTACCTCCTCTTTAGCCTCAAAGGGCAGAGCGAAGACCATTGGTATCAATAAAATTAAAGCAGTTGGAGCCACAAAGAAGCAGCAGATAGAATCTGCTCCATTTGCCGCTAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTGCTGCTCGAGAGATTGGAAAATGAAGGTTTTAAGAGTCCAACTGAAGTGCAGTCTGCAGCAATTCCTACAATCTTGAATAATCATGACGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTTCCCATACTATCTAACGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTGATGGTGAACGTGGGAAGAAAATGGGAATAGAGGCTGTGGTTGTTGCTCCCTCTAGGGAGCTGGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTTGGACTTGCTAACAAAATGGTTCAACAGCTTGTGGGAGGTGCGAACAGATCCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCCGGTAGAATAGCAGAGCTCAGTGCAGCTGGGAAACTTCACACCCACGGCTGTCGTTATCTGGTCCTAGATGAAGTTGATGAACTCCTGTCATTTAACTTTCGGGAGGACATGCACCGGATACTAGAACATGTGGGGAGAAGATCAGGAGCCGAACCACGAGCACAAAATAGTACGGTTCCTAGACGTGCTGAGCGTCAAACAGTTATGGTGTCTGCAACTGTTCCATTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCGCATGATGCCCTTCTTGTCCAAGCCAATAAAGTCGGCCTGCTTGAAACCATTTCTGCTTCCAAACCTGTCAATTTATCAGGATCTGCGCCTGCCTCAAATTCTAACTCTACTACCCTTACGCAGGCAGCAGAGAGTCTACCTCCTGCATTAAAACATTACTATTGTGTCACGAAGTTACAGCATAAAGTTGATACTTTGAGAAGGTGTATTCATGCACTGGACGCCAAATTTGTTATAGCTTTCATGAACCATATTAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGTGGGATGAAAGCTGCAGAGTTACACGGGGATCTTGGGAAACTTGCTAGGTCAACAACTCTGAAAAAGTTCAAGAATGGTGAGGTGAGAGTGCTGGTGACCAATGAATTATCGGCACGGGGATTGGATATAGCGGAATGTGACCTTGTGGTTAATTTGGACTTACCCACAGACTCAATTCACTATGCACACCGAGCTGGCAGGACCGGGCGGCTTGGGAGGTCTGGTACTGTGCTTTCAATATGTGAAGAGCCAGAAGTGTTTGTTGTGAGGAAACTGCAAAAGCAGCTTGGGGTTCCAATAGCGTGCTGTGATTTTGTGGAGGGAAAGCTACTTGTTAAAGAAGAGGAGAAAATGTCAAATACTGTGAGATAA 1683 0.4551 MPVLFSARLVLLAGETLPLRRFLPNSGTSCLHSCVRSLSQLEPQHAPLTPLSIDLNNENETRKNNKVNKLKQLGTSSLASKGRAKTIGINKIKAVGATKKQQIESAPFAAKSFSELGLPHLLLERLENEGFKSPTEVQSAAIPTILNNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSDGERGKKMGIEAVVVAPSRELGMQIVREFEKILGLANKRXVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGAEPRAQNSTVPRRAERQTVMVSATVPFSVVRAARSWAHDALLVQANKVGLLETISASKPVNLSGSAPASNSNSTTLTQAAESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKFVIAFMNHIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDIAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVRKLQKQLGVPIACCDFVEGKLLVKEEEKMSNTVR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2247g00004 561 Gene3D - 387 543 IPR027417 -
Pral2247g00004 561 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Pral2247g00004 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Pral2247g00004 561 Pfam Helicase conserved C-terminal domain 405 510 IPR001650 -
Pral2247g00004 561 CDD DEADc 122 347 - -
Pral2247g00004 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 95 548 - -
Pral2247g00004 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Pral2247g00004 561 Gene3D - 79 349 IPR027417 -
Pral2247g00004 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Pral2247g00004 561 SMART helicmild6 429 510 IPR001650 -
Pral2247g00004 561 SMART ultradead3 130 357 IPR014001 -
Pral2247g00004 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 530 IPR027417 -
Pral2247g00004 561 CDD SF2_C_DEAD 390 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2247g00004 Pral-Chr2247 34946 36696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2247g00004 111 540 Eukaryotic Initiation Factors Gene Family AT3G13920 27.231 2.51e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2247g00004 - - gmx:100812968 803.897