Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2245g00012 ATGGAGTCAGAGGATAAGCATTCTTTGGATTCTAAGTCAGCCTGTGGGTCAGCAGATCTTTCTGGGATCTCTCTGCTTAATGTTGCTAAAAATGCGGAAAGCAGTGCTTGGGGGATACCACACAGGGTTGGTGCACATCATGCATCGAGTGATGCTAGCTTGTTTTCTTGTTCCCTGCCTGTTCTTCCACATCAAAAGTTGAATTTTCCTGATTCCGTGCGTAATGGCCAACCTTTTGATGATAACATGCCAGTGTTTAATAAAGACGACAAGGAAGTTGGGGGGTATGATCCCCTTGAAGATGTTGAAACCAATGCTGTTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAATGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATTTGGACGAGAATGATTTGTTTGGTAGTGGGGGAGGGTTAGAAATGGATTTTGAGCCCCAGGAGAGTCTTAAGATTGGCATGTCAAAGATGAGCATTACTGATGGAGTTGCTTCAAATGGTATTGGCCATTATGTACTTCCAAATGGTGTGGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCAAGAACATTATTTGTGAGAAACATTAACAGTAACGTTGAGGATTCTGAATTAAGATCACTGTTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATCGGGGCTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGTACCGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATCCCTAAGGACAACCCCTCTGAAAAAGACATCAACCAAGGAACTCTTGTAGTCTTCAATTTGGATCCGTCAGTGTCAAATGATGATCTTCGCCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCTGAGGCCGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGAAGAAATTTGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCGCGGCCTTTTAGACATCAAGCAGGTTCACCTTTGGCCAGTTCTCCTCCTGGTACCTGGGCACAATTTAGCAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCAGTAAATAGCAACCATTCATCTGGATTGGCCGCAATTCTCTCCCCTCATGCATCAAACTCTACGAAGATTGCTCCAATTGGCAAGGACTCAGCAAGAGTTAATAGTTCAAATCAGATATTTACAAATGCAGTATCAACAAAAGGAGTAGCTTTTCAGAATTCACTGTCATTTCCCGAGCTAAAAGTAAATGCAAGTTCTAGACCCATTGCTACTTTTGGTGAGTCAAGCTCAACTTCATCAAGCATTGGAACACTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACAGACCATTCAAACACTTCTGCTTGGTCGTCGTCTTCTGCTGGGCTCCCTTTTACATCTAGTGGTGAGAAGCAGGGGTTCCCATATACTAATCGACACAGTTCCTATCTTGGTTCCCGCTCCCATCATCATGTAGGATCTGCTCCTTCTGGCCTTCCTCTTGATAGGCATTTTAGCTATTTCCCGGACTCACCAGAAACTTCTTTCATGAGTCCAGCATCATATGGGAGTATAAATCATGGTGATGGGAACTTTATGAACATGGGTGCTCGTGCAGCTTCTGGGGTTATTGGCCTTTCAGGAAGTGCTGCTGAAACTAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCACAGTTCCTTGTTTCTTGGAAATGGTTCTTATTCTTCAGTCGCTGCAAACAGTGAGGGGTTTATTGAACGTGGCCGGAGTCGGCGACCTGAAAATAGCATTACCCAAATTGATAGCAAGAAGCAGTATCAACTTGACCTGGACAAAATTATCAGTGGCGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGTTGCTGTCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCTTTCATCAACATGGTGTCTGCTTCACATATTGTTCCCTTCTACAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAAGGAAAGGCAGCACTTGTGACACACTTCCAAAATTCGAGCTTGATGAATGAGGATAAGCGATGCAGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGACTGTTGACCAGGAACATTTCTTATCAAGCAATTTGAACATTTGCATCCGTCAACCGGATGGGTCATACTCGGGTGATTTGTTGGAAAGCCCAAAGGGCGATTTGGATGACAAGCTGTAG 2550 0.4314 MESEDKHSLDSKSACGSADLSGISLLNVAKNAESSAWGIPHRVGAHHASSDASLFSCSLPVLPHQKLNFPDSVRNGQPFDDNMPVFNKDDKEVGGYDPLEDVETNAVGNMLPDDEEELLAGIMDDFDLSRLPSQLEDLDENDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVASNGIGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARPFRHQAGSPLASSPPGTWAQFSSPVEHSYLSSFSKSPVNSNHSSGLAAILSPHASNSTKIAPIGKDSARVNSSNQIFTNAVSTKGVAFQNSLSFPELKVNASSRPIATFGESSSTSSSIGTLSGPQFLWGSPTTSYTDHSNTSAWSSSSAGLPFTSSGEKQGFPYTNRHSSYLGSRSHHHVGSAPSGLPLDRHFSYFPDSPETSFMSPASYGSINHGDGNFMNMGARAASGVIGLSGSAAETNSPSFRLMSLPRHSSLFLGNGSYSSVAANSEGFIERGRSRRPENSITQIDSKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETVDQEHFLSSNLNICIRQPDGSYSGDLLESPKGDLDDKL 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2245g00012 849 FunFam MEI2-like protein 5 isoform 2 191 285 - -
Pral2245g00012 849 PANTHER RNA RECOGNITION MOTIF-CONTAINING 131 819 - -
Pral2245g00012 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 268 IPR000504 GO:0003723
Pral2245g00012 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 354 IPR000504 GO:0003723
Pral2245g00012 849 CDD RRM2_MEI2_like 286 356 - -
Pral2245g00012 849 SUPERFAMILY RNA-binding domain, RBD 694 779 IPR035979 GO:0003676
Pral2245g00012 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 275 IPR000504 GO:0003723
Pral2245g00012 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 360 IPR000504 GO:0003723
Pral2245g00012 849 CDD RRM1_MEI2_like 201 277 IPR034453 -
Pral2245g00012 849 Gene3D - 286 381 IPR012677 -
Pral2245g00012 849 Gene3D - 191 285 IPR012677 -
Pral2245g00012 849 FunFam Protein MEI2-like 1 286 381 - -
Pral2245g00012 849 Pfam RNA recognition motif 2 692 788 IPR007201 -
Pral2245g00012 849 CDD RRM3_MEI2_like 695 780 IPR034454 -
Pral2245g00012 849 SMART rrm1_1 288 356 IPR000504 GO:0003723
Pral2245g00012 849 SMART rrm1_1 203 271 IPR000504 GO:0003723
Pral2245g00012 849 SMART rrm1_1 694 770 IPR000504 GO:0003723
Pral2245g00012 849 SUPERFAMILY RNA-binding domain, RBD 199 362 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2245g00012 Pral-Chr2245 59436 67069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2245g00012 199 353 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 2.69e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2245g00012 - - gmx:100812324 1332.01