Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2241g00019 ATGACGGATGCTTGCAGAAGATCCTCCATTTTGGGTCAGTCATACAATTCTCTCTACGTCAATCCTCTTACTGAACTCAGGCACAGCCGTAGCTGCAGCGACAGTGGCAGCTTAGCTTCCAAATGTGACAAATGTGAAGATTTCACGCCCAGAGAAGTCTCAACTGATAATAAAGAGAATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTTTGTGACAAGGAAAATTCAGTGCCTGCAAATGGGTCATATTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCCACAGATAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCGAATGAACGAACCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAATTTATGTTCTGAGAATTCGAGCTCTTTAAAGATTTGGGATTTCTCTGGTTCAGAGGCAGCCCCAGCTTCCTCCTGGTCAACCTTGCCCAATAAGTCTTTGATCTGTAGACCGTTGCCCATAGATATTGGGAGGTGTTCTTGCATCGTTGTAAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGCGCAATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTACCACAAGAGGCGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGACGATAGTTTCCTTGGAACAGTAACGGCTAACCTCATGGGTTCTAAATACCATATTTGGGATCAGGGATATCGTCATAATTCACATGATAAACAGCCAAAACCGCCTCTTGCTGTTGTGATGTTTATACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAACATTACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGAGAAAGTTCGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAGTTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATCCAAAGATCGGTAAAAAATTTCCAACTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAGTAGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACGGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTCTGTGTAG 1245 0.4249 MTDACRRSSILGQSYNSLYVNPLTELRHSRSCSDSGSLASKCDKCEDFTPREVSTDNKENVTPKKKDVTRFCDKENSVPANGSYSLPKHFSKSKSLSTDRILKPNSLQFCMRMNEPEKAFGCKIWDNLCSENSSSLKIWDFSGSEAAPASSWSTLPNKSLICRPLPIDIGRCSCIVVKEAKPEGLSGGAMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSHDKQPKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWERKFDKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2241g00019 414 Pfam Tub family 163 408 IPR000007 -
Pral2241g00019 414 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Pral2241g00019 414 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Pral2241g00019 414 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Pral2241g00019 414 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Pral2241g00019 414 SUPERFAMILY Tubby C-terminal domain-like 149 412 IPR025659 -
Pral2241g00019 414 Gene3D Tubby Protein; Chain A 154 413 IPR025659 -
Pral2241g00019 414 PANTHER TUBBY-RELATED 29 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2241g00019 Pral-Chr2241 141578 144571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2241g00019 20 307 TUB Transcription Factor Family AT1G16070 52.027 1.84e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral2241g00019 Tub 1.8e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2241g00019 K19600 - cave:132188154 582.408