Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2241g00018 ATGACGGATGCTTGCAGAAGATCCTCCATTTTGGGTCAGTCATACAATTCTCTCTACGTCAATCCTCTTACTGAACTCAGGCACAGCCGTAGCTGCAGCGACAGTGGCAGCTTAGCTTCCAAATGTGACAAATGTGAAGATTTCACGCCCAGAGAAGTCTCAACTGATAATAAAGAGAATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTTTGTGACAAGGAAAATTCAGTGCCTGCAAATGGGTCATATTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCCACAGATAGGATTTTGAAGCCAAACTCGCTTCAGTTCTGTATGCGAATGAACGAACCTGAAAAGGCTTTTGGGTGCAAGATATGGGATAATTTATGTTCTGAGAATTCGAGCTCTTTAAAGATTTGGGATTTCTCTGGTTCAGAGGCAGCCCCAGCTTCCTCCTGGTCAACCTTGCCCAATAAGTCTTTGATCTGTAGACCGTTGCCCATAGATATTGGGAGGTGTTCTTGCATCGTTGTAAAGGAAGCAAAGCCAGAAGGACTATCTGGGGGCGCAATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTACCACAAGAGGCGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGACGATAGTTTCCTTGGAACAGTAACGGCTAACCTCATGGGTTCTAAATACCATATTTGGGATCAGGGATATCGTCATAATTCACATGATAAACAGCCAAAACCGCCTCTTGCTGTTGTGATGTTTATACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAACATTACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGAGAAAGTTCGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAGTTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATCCAAAGATCGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAGTAGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACGGGTTACCAGGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTCTGTGTAG 1218 0.4269 MTDACRRSSILGQSYNSLYVNPLTELRHSRSCSDSGSLASKCDKCEDFTPREVSTDNKENVTPKKKDVTRFCDKENSVPANGSYSLPKHFSKSKSLSTDRILKPNSLQFCMRMNEPEKAFGCKIWDNLCSENSSSLKIWDFSGSEAAPASSWSTLPNKSLICRPLPIDIGRCSCIVVKEAKPEGLSGGAMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSHDKQPKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKNITQVQHIKGLPIDWERKFDKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2241g00018 405 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Pral2241g00018 405 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Pral2241g00018 405 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Pral2241g00018 405 Gene3D Tubby Protein; Chain A 154 404 IPR025659 -
Pral2241g00018 405 PANTHER TUBBY-RELATED 29 402 - -
Pral2241g00018 405 Pfam Tub family 163 399 IPR000007 -
Pral2241g00018 405 SUPERFAMILY Tubby C-terminal domain-like 149 403 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2241g00018 Pral-Chr2241 141578 144571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2241g00018 20 307 TUB Transcription Factor Family AT1G16070 52.703 1.60e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral2241g00018 Tub 3e-32 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2241g00018 K19600 - cave:132188154 557.755