Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2240g00002 ATGTCTTCTGTAATAGGCGTTTCATCTATATACCAGACGCCGTCTCTGGAACTATATAAAAGAGCTACAACAGCAGGTGCTACCACCTCCCTTTCGTTCCAATTTTCTGACAACAAGTCCCACTTTAACAACGTTCTGAGAGCTCACCTCGGTAACAATGGTGGCGGAAATTTTAAGAGCGGGGCTAAGCCTAGAGCTAGCTTTGTTCCTTCTTCAATTGCGACGCCCAATTCTTCCGTTCTGAGTGAAGAAGCGTTCAAGGGCTTAGGTCGGGGTTTCTCCGACAAAGACCCTTTGGATGATGTTATTGAAAACGATGACTACGTTTATGACGCTGAAACCGAGGCTTCTTCAGCTGTTGTCAACGAGGAGGAGCTCGACATCTCCAAGCTGGACTTGCCTTCGCGCCTTGTGGAGTCACTCCAGCAACGCGGGATTAGTCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCCCTCGAAGGTCGAGATCTTATTGCCCGAGCGAAGACTGGAACTGGAAAGACATTGGCATTTGGGATTCCAATTATTAAAGGGCTCACTGACGATGAACAAAGAACCTCCCAGAGACGATCTGGTCGTCTTCCCAAAGCATTAGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAAGAGATAAAAGAATCTGCACCCTATTTGAGCACGGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGATCTAATAAACGGGAAGAGTCTTAAACTGAGTGAAGTTAAGTATTTGGTCCTTGATGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAATTAATTTTGGAGAAACTACCATCTGAACGGCAGAGCATGCTTTTTTCTGCAACCATGCCTACCTGGGTGAAGAAACTTGCCAGAAAATATTTGGACGATCCATTGACAATTGATTTGGTTGGTGAAGAGGAGGAAAAACTTGCGGAAGGGATCAAACTTCATGCAATATCAGCCACTGCCACTTCTAAGCGGACAATGCTTTCTGATCTCATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAAACAAAAAGAGATGCTGATGAAGTATCATTGGCGTTAACAAATAGCATACCTTCTGAGGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTAAATGGTTTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGATGTAGCTGCACGTGGACTTGATATTCCAAACGTTGATTTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAGGGTACTTCGATTTTGATGTACACCGGTAGCCAGAGGAGAACGGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTCGAATTCATTACTCCACCAGCTATAGATGATGTCTTGGAATCATCAGCTGACCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAATCCGTTGAGTTTTTCACCCCAACTGCACAAAAATTGATTGAGGAACAAGGAACAAGTGCCCTTGCTGCTGCACTAGCACATCTAAGTGGATTTTCAAAACCTCCCTCATCCCGGTCTCTTATCAACCATGAGCAGGGGTGGGTTACATTACAGCTGACTCGAGATCAAGGAGATTCTAGAAGGTTTCTGTCTGCAAGATCGGTCACTGGGTTTCTTTCCGATGTTTATTCTCCAGCCGCTGATGAAGTTGGAAAAATACATATAATTGCAGACGAAAGGGTTCAGGGGGCCGTTTTTGATCTTCCAGAGGAGATTGCTAAAGAGTTACTGAACAAGGAAATACCACCTGGCAACACTATTTCCAAGATCACTAAGTTGCCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTACGGGAAGTTTTCTGACAGAGATCGTAGAGGTTCAAGGGATCGGAGAGGTTTTAAAACCTCACGGAGATGGGACGGGGGCCGTGATTCTGATGATGAATTTGGTGATTCATATAAAAGAGGTGGTCGAAGTTTTAGAGCCAGCACTAGCTGGTCTCAAAAAGCAAGAAACAGCGGAGGCTTTGATGAATTTGGTGGTTCAAATCGGAAGGGTGGTCGAAGTTCTAGAGCTGGCAATAGCTGGTCTCAAAAGGCAAGAAGCGACGATGGGGATTGGCTAATTGGAGGTAGAAGATCAAGCAGGTCTTCATCGTCAGACAGGGCCTTTGGAGGGGCTTGTTTTAACTGTGGCCAGTCTGGACACCGCGCATCTGAATGTCCCAACAAATTCGGCTTCTAA 2388 0.4531 MSSVIGVSSIYQTPSLELYKRATTAGATTSLSFQFSDNKSHFNNVLRAHLGNNGGGNFKSGAKPRASFVPSSIATPNSSVLSEEAFKGLGRGFSDKDPLDDVIENDDYVYDAETEASSAVVNEEELDISKLDLPSRLVESLQQRGISHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKGLTDDEQRTSQRRSGRLPKALVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGKSLKLSEVKYLVLDEADQMLAVGFEEDVELILEKLPSERQSMLFSATMPTWVKKLARKYLDDPLTIDLVGEEEEKLAEGIKLHAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTSILMYTGSQRRTVRSLERDVGCKFEFITPPAIDDVLESSADQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAHLSGFSKPPSSRSLINHEQGWVTLQLTRDQGDSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKEIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRRGSRDRRGFKTSRRWDGGRDSDDEFGDSYKRGGRSFRASTSWSQKARNSGGFDEFGGSNRKGGRSSRAGNSWSQKARSDDGDWLIGGRRSSRSSSSDRAFGGACFNCGQSGHRASECPNKFGF 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2240g00002 795 MobiDBLite consensus disorder prediction 663 703 - -
Pral2240g00002 795 Pfam GUCT (NUC152) domain 555 655 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pral2240g00002 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 508 IPR001650 -
Pral2240g00002 795 MobiDBLite consensus disorder prediction 706 720 - -
Pral2240g00002 795 Pfam Helicase conserved C-terminal domain 361 468 IPR001650 -
Pral2240g00002 795 SMART helicmild6 388 468 IPR001650 -
Pral2240g00002 795 CDD DEADc 137 335 - -
Pral2240g00002 795 Gene3D - 349 549 IPR027417 -
Pral2240g00002 795 MobiDBLite consensus disorder prediction 641 772 - -
Pral2240g00002 795 MobiDBLite consensus disorder prediction 735 749 - -
Pral2240g00002 795 Gene3D - 759 793 - -
Pral2240g00002 795 CDD GUCT_Hera 562 642 - -
Pral2240g00002 795 Pfam Zinc knuckle 775 791 IPR001878 GO:0003676|GO:0008270
Pral2240g00002 795 Gene3D - 127 338 IPR027417 -
Pral2240g00002 795 SMART c2hcfinal6 775 791 IPR001878 GO:0003676|GO:0008270
Pral2240g00002 795 SUPERFAMILY Retrovirus zinc finger-like domains 762 793 IPR036875 GO:0003676|GO:0008270
Pral2240g00002 795 FunFam ATP-dependent RNA helicase RhlE 116 337 - -
Pral2240g00002 795 ProSiteProfiles Zinc finger CCHC-type profile. 776 791 IPR001878 GO:0003676|GO:0008270
Pral2240g00002 795 FunFam Nucleolar RNA helicase II 356 546 - -
Pral2240g00002 795 CDD SF2_C_DEAD 348 477 - -
Pral2240g00002 795 Pfam DEAD/DEAH box helicase 150 323 IPR011545 GO:0003676|GO:0005524
Pral2240g00002 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 489 IPR027417 -
Pral2240g00002 795 SMART ultradead3 145 351 IPR014001 -
Pral2240g00002 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 334 IPR014001 -
Pral2240g00002 795 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 112 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2240g00002 Pral-Chr2240 11568 17122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2240g00002 131 508 Eukaryotic Initiation Factors Gene Family AT1G72730 36.434 3.20e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2240g00002 - - pcin:129296705 1404.42