Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2234g00003 ATGAGCGGGAAAATAATTGTGTCTGCGGTTTCCCTCATCCTTGTGGTTGGGGTGGTGATCGGCGCCGTCGTGGTGGTTCACAACAAGAACACAGACCCTCAGGTCACGGAACGCCAGCATGCGGTGAAAGCAATGTGCCAGAACACGGAGGACCAAAAGCTTTGCCACGACACTCTGGGCAGCGTGCGGAACAGCTCAGACCCAAAAGCATTCATAGCCGCCGCCTTGGAAGCCACCACCAACAACGTCATCAAGGCTTTGAACATGAGCGATAAGCTCAGCGTTGAACAAGGCAACAGCTCCCAAGGCATCGTCAAGATGGCCCTCGATGACTGCAAGGACTTGCTCCAATTCGCCATGGATAGCCTCCAGGCTTCCACTGACTTCCTGGGCAGCAACAGCGTCCAATCCTTGAGCGATCGATCCCCTGACTTCAAGAATTGGCTCGCTTCTGTCGTCTCCTACCAACAGGCCTGCATGGATGGCTACGACGAAAACGTCGACGGTGCCCAACAGATCAAGTCTCAGCTTCAGGAGAATGGTTTGGACAACGTGGGGAAGCTCACCGGCATAGCCCTTGATATTATGGCTGATTTAGAAAGCATCCTGAACCAGTTTGGTTTGAAGGTGCAAGTGAACCCTGCTTCTCGTCGTCTTCTTGAGGTGGACAGCGAAGGGTATCCGACCTGGTTCTCAGCCGCTGACCGCAAGCTGTTGGCCAACGTAGCGAGGGGAAGGGGACATCATATCAAGCCCAACGTTGTGGTGGCCCAGGATGGCAGTGGCCAGTTCAAGACCATCATGGCCGCTGTTAACTCTTATCCTAAGGGTTTCAAAGGAAGATATATCATCCAAGTCAAGGCTGGTACTTACCGTGAGTATGTCGTCATTCCTAAGACGGCCGTCAATATCCTTATGTACGGTGAGGGCACTGATAAAACCATCGTCACCGGTAACAGAAACAATGTCGATGGTTACACCACATCGAACTCAGCTACTTTCGTAAATACCGCAAACGGGTTCATCGGCAAGTACATGACATTTATGAACACCGCGGGTCCCGAAAAGCACCAAGCAGTGGCATTCAGGAACCAGGGAGATATGTCGGCTATGTTCGATTGTTCTTTCGTGGGTTTCCAGGACACGTTGTACGCTCAAAGCAATCGTCAATTCTACAGGAACTGCGACATCTCCGGTACCGTTGACTTCATTTTTGGAATGTCCACCACGTTGATCCAGAGCTCCCGAATCATCGTAAGGAAGCCAATGGACAACCAATTCAACACAGTGACGGCAGATGGCACGTCCGAGAAGAACGCACCCACAGGAACAGTCATCCAGAACTGCGACATTGCTCCAGAGAGCGCTCTGTTCCCGGTGAGGTTCAAGATTAGATCCTACCTGGGAAGGCCGTGGAAGCAATATGCTAGAACTGTGGTGATGGAATCCAGAATAGCTGACTTCATTCAAGCCGATGGGTGGACCCCATGGTCAGGAAGCATTTACCTCAACACATTATACTACGCAGAGTATAACAACGAAGGACCTGGCGCTAATGTTGCCAAGAGGGTTAAGTGGCCAGGTTACAAGGGCCTCATCAGTAAGGCTGAAGCTACCCAGTTCACCGCCGGCCAGTTCCTGAGAGGTGGTCCCACTTCCCGAGCTGAGGACTGGATGAAGCCCCTTCATGTTCCTTTTGACATTGGCTTCACCAAGCCTTGA 1722 0.5186 MSGKIIVSAVSLILVVGVVIGAVVVVHNKNTDPQVTERQHAVKAMCQNTEDQKLCHDTLGSVRNSSDPKAFIAAALEATTNNVIKALNMSDKLSVEQGNSSQGIVKMALDDCKDLLQFAMDSLQASTDFLGSNSVQSLSDRSPDFKNWLASVVSYQQACMDGYDENVDGAQQIKSQLQENGLDNVGKLTGIALDIMADLESILNQFGLKVQVNPASRRLLEVDSEGYPTWFSAADRKLLANVARGRGHHIKPNVVVAQDGSGQFKTIMAAVNSYPKGFKGRYIIQVKAGTYREYVVIPKTAVNILMYGEGTDKTIVTGNRNNVDGYTTSNSATFVNTANGFIGKYMTFMNTAGPEKHQAVAFRNQGDMSAMFDCSFVGFQDTLYAQSNRQFYRNCDISGTVDFIFGMSTTLIQSSRIIVRKPMDNQFNTVTADGTSEKNAPTGTVIQNCDIAPESALFPVRFKIRSYLGRPWKQYARTVVMESRIADFIQADGWTPWSGSIYLNTLYYAEYNNEGPGANVAKRVKWPGYKGLISKAEATQFTAGQFLRGGPTSRAEDWMKPLHVPFDIGFTKP 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2234g00003 573 Gene3D - 247 570 IPR012334 -
Pral2234g00003 573 NCBIfam pectinesterase inhibitor domain 14 195 IPR006501 GO:0004857
Pral2234g00003 573 SUPERFAMILY Pectin lyase-like 249 566 IPR011050 -
Pral2234g00003 573 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Pral2234g00003 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 200 IPR035513 -
Pral2234g00003 573 CDD PMEI-like_3 44 197 - -
Pral2234g00003 573 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Pral2234g00003 573 SMART PMEI_2 37 195 IPR006501 GO:0004857
Pral2234g00003 573 FunFam Pectinesterase 247 570 - -
Pral2234g00003 573 Coils Coil 160 180 - -
Pral2234g00003 573 PANTHER PECTINESTERASE 16 560 - -
Pral2234g00003 573 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Pral2234g00003 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Pral2234g00003 573 FunFam Pectinesterase 38 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2234g00003 Pral-Chr2234 27970 29799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2234g00003 1 570 Carbohydrate Esterase AT2G47030 40.165 1.33e-139 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2234g00003 K01051 - gmx:100775246 743.036