LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2227g00005	ATGAGTAGTAATGGTAAATCTCATGGTGGTAAGCAAAGCGCCAGAGATGTCATCTGCAACGCGGGTGCTGGAGCTGCTGCTGGGGCTATAGCGGCTACATTTGTTTGTCCACTGGATGTAATCAAGACGAGACTACAAGTTCATGGCGTTCCTCCTGGGCACAAAGGTAGTTTTATTGTCACAAGCTTGCGGAATATAATCAGGACTGAAGGTTTCAGGGGAATTTACCGTGGCCTTTCCCCAACAATAATAGCATTACTTCCAAACTGGGCGGTTTACTTCACAGTTTATGGTCAACTGAAAGGCCTTTTCCTTTCACAAGCAGATAGTTGCCGCCAATTATCAAGTGTTGAAAATATGGTAGCTGCTGCCGGTGCTGGGGCAGCAACAGCAATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACGCAAGGAATGAGGTCTGACGTTGTTCCGTACAAAAGCATTCTTTCTGCTTTGACGAGGATAATGCACGAGGAAGGCATACGAGGGCTGTATAGTGGCATAGTGCCTTCCTTGGCTGGTGTAAGTCATGTTGCTATTCAATTCCCAGCATATGAAAAGATCAAGTCATACATGGCGGAAAAGGATGATACAACTGTTGACAAACTGGGCCCCGGAAAGGTTGCCATTGCATCCTCAATTGCAAAAGTAATTGCCTCTGTAATGACTTATCCACATGAGGTGATTCGTGCGAGGCTGCAGGAGCAAGGCCAGGCCAAAAGTGCCGGGGTCCAGTATGCTGGGCTTGTTGATTGTTCTAGGAAGGTGTTCCATACTGAAGGCCTTCCCGGCTTCTATCGGGGTTGTGCGACAAATTTACTAAGAACAACTCCATCAGCTGTAATTACATTCACCAGCTTTGAGATGATACAGAGGTTTCTGCAACGTGTTGTACCTCAGGACATGGGATACTCACAAGGGTCTCGTAAACCAGATGACCTTAGCAAGCCGCAGCCAAACAACAGTGACAAAAAATTCGAAGACAACACAGGGTGGAGGCAATCACCGTCTGAGTCTAATAAGACAGCTTTAAATAAAGAGCAGCTATCTAGACACGGATAG	1095	0.4621	MSSNGKSHGGKQSARDVICNAGAGAAAGAIAATFVCPLDVIKTRLQVHGVPPGHKGSFIVTSLRNIIRTEGFRGIYRGLSPTIIALLPNWAVYFTVYGQLKGLFLSQADSCRQLSSVENMVAAAGAGAATAISTNPLWVVKTRLQTQGMRSDVVPYKSILSALTRIMHEEGIRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYMAEKDDTTVDKLGPGKVAIASSIAKVIASVMTYPHEVIRARLQEQGQAKSAGVQYAGLVDCSRKVFHTEGLPGFYRGCATNLLRTTPSAVITFTSFEMIQRFLQRVVPQDMGYSQGSRKPDDLSKPQPNNSDKKFEDNTGWRQSPSESNKTALNKEQLSRHG	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2227g00005	364	Gene3D	Mitochondrial carrier domain	2	108	IPR023395	-
	Pral2227g00005	364	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	114	202	IPR018108	-
	Pral2227g00005	364	MobiDBLite	consensus disorder prediction	313	364	-	-
	Pral2227g00005	364	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Pral2227g00005	364	MobiDBLite	consensus disorder prediction	327	342	-	-
	Pral2227g00005	364	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	310	IPR044712	GO:0006862\|GO:0055085
	Pral2227g00005	364	SUPERFAMILY	Mitochondrial carrier	16	300	IPR023395	-
	Pral2227g00005	364	PRINTS	Mitochondrial carrier protein signature	223	245	IPR002067	GO:0055085
	Pral2227g00005	364	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Pral2227g00005	364	PRINTS	Mitochondrial carrier protein signature	129	147	IPR002067	GO:0055085
	Pral2227g00005	364	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Pral2227g00005	364	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Pral2227g00005	364	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	305	-	-
	Pral2227g00005	364	Gene3D	Mitochondrial carrier domain	109	313	IPR023395	-
	Pral2227g00005	364	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	214	304	IPR018108	-
	Pral2227g00005	364	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Pral2227g00005	364	Pfam	Mitochondrial carrier protein	214	307	IPR018108	-
	Pral2227g00005	364	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2227g00005	Pral-Chr2227	42205	48032	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2227g00005	1	354	Chloroplast and Mitochondria Gene Families	AT1G25380	63.966	3.88e-148	421

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2227g00005	K15115		-	gmx:100816376	521.931