Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2220g00001 ACACCACATTCAGTAGTTGTGGCTACTACAAGGAGGCTGCCTTCAGATTCTGGTGGTGCCTTCGCAGACTGGGCAACCACATCCTCTGCCGGACGCGCCGCCGCCCCCGACGATCTCTCCCTGGGATTCAATGCCGGTCCCGCCTCCGCCACCCGGGGGGCTCCGGCCGGAATGTGGTCCGGAGGGTCTAGGTCAGTCAACTTTGGCCATTCCGAGATGGGCATGGTGGGCCTTCGAGATGTCTTCGTGGTGGCGTCTGCTTCTCCCTACCATAACGACGTCGTCATGCCCGATCCTCACAACGGCGCCATCCACGGGGTCGGCGTTATCCCACTCCTCCCGGCGGGTCCTTGTCTCGACGGTGACACAAGCAACATGCTCAATCTCAGCAGTCATAATCGAAGCCGTAGCAGCGGAATTCAGCTGTGGCAAGATCATTACCTGAAGGAGCACGGCCTTCCCGAGCACAACGGTACGACTAGCTCCGGCAATCTTGCTCTCAGCGGCGGCGGTGGTGGAGGGTTAAGCGGCTCGGCTTTGAGCTCAGGAGGTACAACGTGTCAGGACTGTGGCAATCAGGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGAACTTGCTGCAAGAGCCGAGGTTTTGATTGCCCTACTCACGTGAAGAGCACATGGGTACCCGCTGCTCGTCGGAGGGAACGCCAGCATATGGCTGCCGCCGCTTCCGCTGCAGCCGGTGGTGGTGGTGGGTTCAGTGGAGCTACATCAGTCGCCAAGAAACCTAAACTCGTCGCCTCGCAAACCACTACCGCCTCACGTACTTCTACTTCCAACACAACTCCTCCTCGAAGCTTTGACACTACCTCAAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCGGGTCAAGTACGTGCGCCGGCTGTGTTCAAGTGCGTTCGTGTTTCGGCGGTGGATGACGGCGGAGACGACGAGTATGCTTATCAAGCAGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGGATTCTGTATGATCAAGGGGTTGAAAATGGAGAAGCCTATCCTAATATCTCTGACCTGCATTTGGGCGGTGGTGGTGGTGGAAACGGCGGAAGCAGCGGCGGTGCCGGAAGAAACGGAGCTTCTTCTTCGTCCCCAATGCTTGATCCTTCTGATATATACGCCGCTGCTTCAGGTGGGGCTTTTCTTGCCGGTTCAACATATGGTAATGCCATAAATTGA 1233 0.5645 TPHSVVVATTRRLPSDSGGAFADWATTSSAGRAAAPDDLSLGFNAGPASATRGAPAGMWSGGSRSVNFGHSEMGMVGLRDVFVVASASPYHNDVVMPDPHNGAIHGVGVIPLLPAGPCLDGDTSNMLNLSSHNRSRSSGIQLWQDHYLKEHGLPEHNGTTSSGNLALSGGGGGGLSGSALSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQHMAAAASAAAGGGGGFSGATSVAKKPKLVASQTTTASRTSTSNTTPPRSFDTTSSHQDASFKESLPGQVRAPAVFKCVRVSAVDDGGDDEYAYQAVVKIGGHVFKGILYDQGVENGEAYPNISDLHLGGGGGGNGGSSGGAGRNGASSSSPMLDPSDIYAAASGGAFLAGSTYGNAIN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2220g00001 410 NCBIfam LRP1 C-terminal domain 297 345 IPR006511 -
Pral2220g00001 410 Pfam Domain of unknown function (DUF702) 184 346 - -
Pral2220g00001 410 MobiDBLite consensus disorder prediction 258 294 - -
Pral2220g00001 410 NCBIfam putative zinc finger domain, LRP1 type 186 228 IPR006510 -
Pral2220g00001 410 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 131 393 IPR007818 GO:0003700|GO:0006355
Pral2220g00001 410 MobiDBLite consensus disorder prediction 362 382 - -
Pral2220g00001 410 MobiDBLite consensus disorder prediction 229 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2220g00001 Pral-Chr2220 13208 14758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2220g00001 7 390 C2H2 Transcription Factor Family AT5G12330 49.275 3.57e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral2220g00001 DUF702 9.1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2220g00001 - - vvi:100251674 445.277