Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2216g00004 ATGGGAACTGGATGGAGAAGAGCCTTTTGCACTCGTGACCCGGAATCTGCCATATCCGATAAGCAGCACAGGGGCACGAGTCCAAGCCCCAGCCCCAGAAGCTGTGTTCGATTGGGTTTTCTCTCCGGCGGGGGCAATCCTTCCACCCCGCGCTTGCAGCAGCAATCTCAAGCCGTGTCTAGTCCGAGCTTGCGTTGCCGGACACTTTCAGAAGCAGCACGTGAATGACAGCCCCAGATTTCAAAGCAAAATACTCCCAGGGCAACCAAGTCCCCCAAAACCAGTTCAACCTCAAATCCCGCATCGCCGCGTTCTCCTTTGAAGTTATCTCTCTTCAGGAACAGCTTCAAATTCCGGAGTAGTTGTGGAATCTGCTTGAATAGCGTAAAAACCGGTCAGGGAACGGCCATTTACACTGCAGAATGTACTCATGCCTTTCACTTTCCCTGTATCGCCGATTATGTACGCAAACATGGAAGCCTCGTCTGCCCCGTCTGCAACGCTACCTGGAAAGACGTGCCTCTGCTAGCCGCACACAAGAACCACGCCACAGAATCCGCCGAAAAGAACGACATCGTGGTTGACAAGAACGTCGTAAAACCAAATGCCACCCAGAAGACTACAGAAAACTCATCCTCAGTTTTCAGAACCCAGCTTGTTGAACCGCCCCAACAATTACCACAGAAGCACCCAAAGCAATTTGATTGTTACAGGTCCTACGACGATGACGAGCCGCTTCTGTCTCCCACATCCGGTGGTCGCATCATTCCAATACCTGAAGCCGACGAAAACGCCGAAGAAGGCGAAGACGACGTTGAAGAATTTCAGGGATTTTTTGCCAATGCAAAATCTTCATCCTCAATCAAATCTTACTCTGATGACCTGCAAATAAGCGACAAAGATTCCAGGAACGTTCAGGTGAAGTTGATCCCCGAGTGTGCCGTAGTGTCAGTCTCCCGGACCCACGAGACTTACGCTTTGGTTTTGAAAGTGAAGGCTCCTCCGCCTCCTCCTGCAGCGCGCAGTGGCAATAACAGTATGACGCCGCGTCTTGGTCAGTCGCAGCGAGCTCCCATAGATCTCGTAACGGTTCTTGACGTTGGTGCGAGCATGACAGGCGCGAAGCTGCACATGCTTAAGCGCGCGATGCGTTTGGTCATTTCCTCACTCAGTCCAGCCGACAGGCTCTCCATAGTGGCTTTCTCGGCCACTTCCAAGCGGCTCTTACCCTTGAGAAGAATGACGGCTCAAGGACAGCGCGTGGCTCGGCGCATAATCGATCGGCTTGTCCCTGGCCATGGCACTTGTGTGGGCGATGCTCTGAGAAAAGCCGCAAAAGTGCTGGAGGACCGGAGGGAGAGAAACCCGGTTGCCAGCGTGATGCTCCTATCGGACGGTCAGGACGAACGAGTTCACAGCAGTAACGTCAACAACCAACGGAAATCCTCGAACCACGCGTCCTCGACCCGATTCGCCCACATTGAGATTCCGGTTCATGCTTTCGGGTTCGGAAAAAAGAGTGGCTTCAGCCACGAGCCGGCCGAGGATGCATTTGCCAAGTGCGTCGGTGGGCTGTTGAGTGTTGTTGTACAGGACTTGAGAATTCAGCTCGGCTTCCAGTCGGGCTCATCGGCGGCTGAAATCAGCGGCATCTATTTATGCGGCGGTCGAACAACAGCAATGAGCTCAGGCAGCGTACGGCTCGGCGACTTGTACGCGGAGGAGGAGAGGGAGTTACTGGTGGAGCTGAGAGTTCCAACGTCGGCACTGGGGACCCACCACGTGATGAGGGTACGGTGCTTGTATAAGGACCCCGCTTCTCAGGAGATCGTATCGAGTAGGGAACAGGCCCTACTGGTTCCGCCACCTCAGGGCACGCGAAGCGAACGCTTGAGGAATTTCTTCATATCCACTCGAGCCATAGCCGAGTCTCGCCGGCTCGTGGACTACAACGACTTCACCAGCGCTCATCATTTACTGGCTTCGGCTCGTGCGCTCTTGATGCAGGCCAAGTCGAGCTCAGCTGAGGAGCACGTGCGTGCGTTGGAAGCTGAGCTGGCAGAGCTTCATTGGCGCACTCAGAACACGACGGAGCAGCAGATGATGACGCAGGAACGCAGGCGAGGGAGCGAGAGGGAGATGACGAGCTTGGTGGATGATAATGGTGAGCCGCTCACGCCGACGTCGGCTTGGAGAGCTGCTGAGAAGCTGGCTAAGGTGGCCATCATGAAGAAGTCATTGAACAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2286 0.5459 MGTGWRRAFCTRDPESAISDKQHRGTSPSPSPRSCVRLGFLSGGGNPSTPRLQQQSQAVSSPSLRCRTLSEAAREXQPQISKQNTPRATKSPKTSSTSNPASPRSPLKLSLFRNSFKFRSSCGICLNSVKTGQGTAIYTAECTHAFHFPCIADYVRKHGSLVCPVCNATWKDVPLLAAHKNHATESAEKNDIVVDKNVVKPNATQKTTENSSSVFRTQLVEPPQQLPQKHPKQFDCYRSYDDDEPLLSPTSGGRIIPIPEADENAEEGEDDVEEFQGFFANAKSSSSIKSYSDDLQISDKDSRNVQVKLIPECAVVSVSRTHETYALVLKVKAPPPPPAARSGNNSMTPRLGQSQRAPIDLVTVLDVGASMTGAKLHMLKRAMRLVISSLSPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIIDRLVPGHGTCVGDALRKAAKVLEDRRERNPVASVMLLSDGQDERVHSSNVNNQRKSSNHASSTRFAHIEIPVHAFGFGKKSGFSHEPAEDAFAKCVGGLLSVVVQDLRIQLGFQSGSSAAEISGIYLCGGRTTAMSSGSVRLGDLYAEEERELLVELRVPTSALGTHHVMRVRCLYKDPASQEIVSSREQALLVPPPQGTRSERLRNFFISTRAIAESRRLVDYNDFTSAHHLLASARALLMQAKSSSAEEHVRALEAELAELHWRTQNTTEQQMMTQERRRGSEREMTSLVDDNGEPLTPTSAWRAAEKLAKVAIMKKSLNRVSDLHGFENARF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2216g00004 761 Pfam von Willebrand factor type A domain 361 467 IPR002035 -
Pral2216g00004 761 ProSiteProfiles Zinc finger RING-type profile. 122 167 IPR001841 -
Pral2216g00004 761 Gene3D von Willebrand factor, type A domain 360 528 IPR036465 -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 46 67 - -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 203 272 - -
Pral2216g00004 761 ProSiteProfiles VWFA domain profile. 360 504 IPR002035 -
Pral2216g00004 761 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 120 756 - -
Pral2216g00004 761 SMART VWA_4 358 543 IPR002035 -
Pral2216g00004 761 SMART ring_2 122 166 IPR001841 -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 698 726 - -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 74 107 - -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 1 107 - -
Pral2216g00004 761 CDD vWA_C3HC4_type 359 530 - -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 704 718 - -
Pral2216g00004 761 SUPERFAMILY RING/U-box 121 172 - -
Pral2216g00004 761 Coils Coil 679 699 - -
Pral2216g00004 761 FunFam Probable E3 ubiquitin-protein ligase EDA40 360 525 - -
Pral2216g00004 761 Pfam RING-like zinc finger 122 151 IPR001841 -
Pral2216g00004 761 MobiDBLite consensus disorder prediction 203 224 - -
Pral2216g00004 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 177 IPR013083 -
Pral2216g00004 761 SUPERFAMILY vWA-like 358 534 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2216g00004 Pral-Chr2216 45641 48105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2216g00004 122 172 C3H Transcription Factor Family AT1G74410 41.176 2.65e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2216g00004 - - qsa:O6P43_015418 986.482