Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2216g00003 ATGTCTGCGCCGCTGCTCGGCATAGGCGAGGAAGAAGGTAAAACCAATGCTACTTTGCTGGTTTCCTCAACTGCGGCTGAAAATGGACTCCTCAATGCCACAGAGTTAAAAGAACGCAACTATATGGGATTATCTGATTCTTCTTCTGTGGACAGCTCAGTCCTGTCCTTCTCAGATGAGACTAAAAGTAACCTAAACCTAAAAGCCACAGAGCTGAGGCTTGGCCTTCCAGGATCTCAGTCTCCTGACCGGGACTCAGATCTCTGCTTGAGAAGCTCAGCTCAGCTGAATGAGAAACCCTTGTTTCCATTGCGCCCATTGACTGATGATCACCACTCTTCAACAAAGACTGCTGTTTTGGGCAGCAAGAGAGGGTTCTCAGATGCCATGAATGGTTTCTCAGAGGCAAAATTTCTTGCTGATTCAGAGGCCAATAATGTACTGTCCCCCAGGCCTTCTCATAACATGGGATTGAAAACTAGTGGTGTGCTTGAGAATCTCGGGGCTCAAGCCAAAGCCAAAGAAGTAACACCAACAAAGGCAAAACTTGAGAGGCCTCATTCTGTCAAGGAAACTAGAGCAAACCTCGAAGGTTCTGCCAATAACAATAGCAATGCACCAGCTACCAAGGCCCAAGTTGTGGGTTGGCCTCCTATAAGATCATTCAGGAAGAATTCACTGGCTACTACTTCAAAGAATACTGAAGAAGGAGATGGAAAAGCAGGATCTGGTGCGCTGTTCATCAAAGTCAGTATGGATGGTGCTCCATATTTAAGGAAGGTAGATTTGAAGAACTACTCCGCATATCCAGAACTTTCATCTGCACTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATATGGCTCTCATGGAACTCTAGGCAGGGAGATTTTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGGTCTGAATATGTTCTAACCTATGAGGACAAAGAGGGGGACTGGATGCTTGTGGGTGATGTTCCGTGGGAGATGTTCATTGATACATGCAGGAGGCTGAGGATCATGAAAAGTTCCGATGCCATTGGTCTTGGTTAG 1065 0.4601 MSAPLLGIGEEEGKTNATLLVSSTAAENGLLNATELKERNYMGLSDSSSVDSSVLSFSDETKSNLNLKATELRLGLPGSQSPDRDSDLCLRSSAQLNEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEAKFLADSEANNVLSPRPSHNMGLKTSGVLENLGAQAKAKEVTPTKAKLERPHSVKETRANLEGSANNNSNAPATKAQVVGWPPIRSFRKNSLATTSKNTEEGDGKAGSGALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQYGSHGTLGREILNESKLKDLLHGSEYVLTYEDKEGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2216g00003 354 FunFam Auxin-responsive protein 240 354 - -
Pral2216g00003 354 Pfam AUX/IAA family 70 353 IPR033389 -
Pral2216g00003 354 SUPERFAMILY CAD & PB1 domains 243 346 - -
Pral2216g00003 354 Gene3D - 240 354 - -
Pral2216g00003 354 MobiDBLite consensus disorder prediction 171 192 - -
Pral2216g00003 354 ProSiteProfiles PB1 domain profile. 245 347 IPR000270 GO:0005515
Pral2216g00003 354 MobiDBLite consensus disorder prediction 177 192 - -
Pral2216g00003 354 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 352 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2216g00003 Pral-Chr2216 30789 33921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2216g00003 259 347 B3 DNA Binding Superfamily AT1G19220 33.708 1.15e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral2216g00003 AUX_IAA 1e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2216g00003 K14484 - gmx:100815447 538.495