Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2212g00004 ATGGCTTCTCCTCCTTCTTCTCCGGTTGATTCCTCCACCACCACCCCACCTGCCGATCCTCCCACCGCTGTGCCTCTCTCGGTTGCTGTTCCCCCTGCTCTGCCCTCTTCGCAGCCTTCGTCATCCTCTCGCCGCCTTCCGCCGCCGTGCTGGTCTGCTGAGGAGACCGTCGCTCTCATCGAAGCGTACCGTGACAAGTGGTATTCTCTTGGCCGGGGTAATCTCAAGGCCACGCATTGGCAAGATGTCGCCGATGCTGTTACCTCCCGCTGCCCCGGGGCGTCGCCGCCCAAAACCGCCGTGCAGTGCCGTCACAAGATGGAGAAGCTCCGGAAGCGGTACCGCACGGAGATCCAACGCGCGCGTAACATGCCTGTTGCGAGGTTCAATTCCTCTTGGGTTCACTTCAAACGGATGGATTCCATGGAGAAAGGTCCCTCCCCTGTCAAACCTGAGAACGATTCCGATGATAGCCCCGATGAGTTTGATGGCGATGAGGATAATGACTTGTACGAGGAATTCAGAAGTGGCAGTGGGTCCAATACGAGGAGCTTGAATAAGTTGTACCGGAATGGGATGAGCGGCGGCGGCAGCACCGTCAATGGCAGCGGAGGATTTCGGATTCGAATTCCGGATGGGGTAAGCATTGCACAACCTGGGAATTCCAAATTGTATGGGAAAATTTCTGATCAGAAGTACAACTATAACAATAACAACCCTGGTTCAAAATCTGGGCATGGCTTTAATAATCCCAATTATGAAACTAGGGTTTTGAAAGAGAGGAGTGGACTGGGGAAAAGAGAAAGAGAGAGGGAGAGAGATCCTGTGAGTGAGATGGTGTGTGCAATTAAGGTTTTGGGAGATGGGTTTGTGAAGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGAGTATGCGAATGGAGATGGAGATGAAGCGTACGGAGATGATTCTGGAATCGCAGCAGAGGATTGTGGAGGCATTTGCAAAAGCAGTTTCAGAGAAGAAGACAAAGAGAATGCCTTCATCACCTTCAGAATCATAG 1050 0.5238 MASPPSSPVDSSTTTPPADPPTAVPLSVAVPPALPSSQPSSSSRRLPPPCWSAEETVALIEAYRDKWYSLGRGNLKATHWQDVADAVTSRCPGASPPKTAVQCRHKMEKLRKRYRTEIQRARNMPVARFNSSWVHFKRMDSMEKGPSPVKPENDSDDSPDEFDGDEDNDLYEEFRSGSGSNTRSLNKLYRNGMSGGGSTVNGSGGFRIRIPDGVSIAQPGNSKLYGKISDQKYNYNNNNPGSKSGHGFNNPNYETRVLKERSGLGKRERERERDPVSEMVCAIKVLGDGFVKMEQMKMEMAREIESMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKTKRMPSSPSES 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2212g00004 349 CDD SANT 51 110 IPR001005 -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 227 251 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 1 49 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 33 47 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 140 155 - -
Pral2212g00004 349 Coils Coil 104 124 - -
Pral2212g00004 349 ProSiteProfiles Myb-like domain profile. 51 111 IPR001005 -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 174 201 - -
Pral2212g00004 349 Gene3D - 51 116 - -
Pral2212g00004 349 SMART 118neu2 58 147 IPR006578 -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 156 170 - -
Pral2212g00004 349 Pfam Myb/SANT-like DNA-binding domain 49 142 IPR044822 -
Pral2212g00004 349 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 21 336 IPR044823 -
Pral2212g00004 349 FunFam Trihelix transcription factor ASIL2 51 116 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 227 253 - -
Pral2212g00004 349 Coils Coil 297 317 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 1 28 - -
Pral2212g00004 349 MobiDBLite consensus disorder prediction 140 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2212g00004 Pral-Chr2212 20745 22534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2212g00004 2 142 Trihelix Transcription Factor Family AT3G14180 33.103 3.36e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral2212g00004 Myb_DNA-bind_4 3.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2212g00004 - - pcin:129290378 540.806