Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2201g00004 ATGTCAACCGGACCAACACACTGGTGTTATGAGTGTGGGCATCCGATTGCACTTGAAGGCAGAGAGGTCATTTGCCCTTACTGTCATGAAGGCTTTGTGCAAGAACTTAATGAGAGGCATGGGTTTCAACCATATAACGCTCTTGAAGATTTTCATCACATGCCCGATTTTTTTGATGCCATACATGCCTTTATGGCGCAGAGAGTTTCTGAACCAAGATTCGGGCTTGTAGATGCTTTTGACAATTTCAGGAGGCAGAGAATAGCTGGGCAATTCCCCAACATTGATGTTAGACAAAGGTCTGATACTGCACTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCATGTTTCATGGTAGTGGAGGGGAACCTAGGCCTATTGATTTTGGTGGTTTGTTGATGGCCCCTGGACTGGAAGCATTTATTCAACAGCTCACCATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCCTCAATTGATGCAATGCCTACTATTAAGATCACGCGAGCGCATCTTCGCTCTGATTCACAATGTCCGGTCTGTCAAGAAAAATTCGAGCTAGGCACCGAGGCAAGGAAGATGCCTTGTAACCATATTTATCACTCCGACTGTATTGTTCCCTGGTTGGTTCGGCATAACTCTTGTCCTGTTTGCCGTATTGAGCTGCCACCTCCAGGACAGGGTAGCTCTCGTGGTGGAAGTCATGGAGGTAGGAATGTCAGCAGCAGCAGCATCCATGGTAGCTCGAGGAGACAGAACCAAGGAAGGAGAAATTCGCTATCATCTTGGTGGCCATTCTGA 822 0.4659 MSTGPTHWCYECGHPIALEGREVICPYCHEGFVQELNERHGFQPYNALEDFHHMPDFFDAIHAFMAQRVSEPRFGLVDAFDNFRRQRIAGQFPNIDVRQRSDTALFPEWSQDFFNSGPSFMFHGSGGEPRPIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITRAHLRSDSQCPVCQEKFELGTEARKMPCNHIYHSDCIVPWLVRHNSCPVCRIELPPPGQGSSRGGSHGGRNVSSSSIHGSSRRQNQGRRNSLSSWWPF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2201g00004 273 MobiDBLite consensus disorder prediction 239 273 - -
Pral2201g00004 273 SMART ring_2 185 225 IPR001841 -
Pral2201g00004 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 230 - -
Pral2201g00004 273 MobiDBLite consensus disorder prediction 231 273 - -
Pral2201g00004 273 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Pral2201g00004 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Pral2201g00004 273 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Pral2201g00004 273 SUPERFAMILY RING/U-box 165 232 - -
Pral2201g00004 273 Pfam Ring finger domain 184 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2201g00004 Pral-Chr2201 12082 14808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2201g00004 110 273 C3H Transcription Factor Family AT1G68180 32.317 1.46e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2201g00004 K11982 - qsa:O6P43_020907 342.043