Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2197g00002 ATGTCGAGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGTTGACGAACGTGGCGGTGGTGCGTCTGAGGAAGCATGGAAATCGCTTCGAGATCGCCTGCTATCCAAACACGGTCCTTTCCTGGCGTTCTGGCGTGGAGAAAGATCTGGATGAAGTATTGCAGTCGCATACCGTCTATTCAAATGTTTCTAAAGGAGTTCTAGCAAAGTCAAAGGATTTGGTTGCTGCCTTTGGGACTGATGATCAGTCAAGGATATGTTTAGAGATTTTAAAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTCTTTCAAATCAGTTCAGGGATATCGCAACCATTGCTATGCAGAAGACATACAATCCTGAAACTCAACGTCCTTACACAATCAATATGATTGAAAGACTAATGCGCGAAATACATTTTGCTGTCGATCCAAACAGCAGTTCAAAGAAGCAGGCGCTGGAAGTTATTCAAGAGCTTCAAAAGCACTTTCCAATTAAACGGTGTCCACTAAGAATACGAGTTGCTGCTCCAGAGGAGGAAGTGCGTACACTGCTAGATAAGCTGAATGCTTGGAAGGCCAGCATCATTTCCAAAGAAGCATCTGCTAATCAGTTGTCCATTGTGAGATTGAATTCCCCTAGTTTTTTGCGTGGAAGTAGTTCTTCATTTGAATCCATTTTGCGTTTCAACTGCAATGGTTTTTCTTCTCTCGCTGACTCTTAC 735 0.4422 MSRTLVQPIGQKRLTNVAVVRLRKHGNRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLVAAFGTDDQSRICLEILKKGELQVAGKERESILSNQFRDIATIAMQKTYNPETQRPYTINMIERLMREIHFAVDPNSSSKKQALEVIQELQKHFPIKRCPLRIRVAAPEEEVRTLLDKLNAWKASIISKEASANQLSIVRLNSPSFLRGSSSSFESILRFNCNGFSSLADSY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2197g00002 245 FunFam SBDS, ribosome maturation factor 3 96 - -
Pral2197g00002 245 NCBIfam ribosome assembly factor SBDS 13 198 IPR002140 GO:0042256
Pral2197g00002 245 FunFam SBDS, ribosome maturation factor 100 172 - -
Pral2197g00002 245 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 226 IPR039100 -
Pral2197g00002 245 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Pral2197g00002 245 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Pral2197g00002 245 Gene3D - 1 96 IPR036786 -
Pral2197g00002 245 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Pral2197g00002 245 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Pral2197g00002 245 Gene3D - 100 172 IPR037188 -
Pral2197g00002 245 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2197g00002 Pral-Chr2197 20314 22045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2197g00002 46 230 C2H2 Transcription Factor Family AT1G43860 67.027 1.82e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2197g00002 K14574 - gmx:100797497 364.77