Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2197g00001 ATGGAAGATTCTGATCTCGTGGCGATTGCTTCATCAACAGGCGATCAGGACTCCAAGAGTTGTCCTCGCGGTCACTGGAGGCCCGCCGAGGATGAAAAACTCCGGCAGCTTGTCGAACAGTATGGAGCGCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGACCCTAGGATTAACAGGAGGCCATTCACTGAAGAAGAGGAAGAAAGGTTATTGGCAGCCCATCGCATTCATGGGAACAAGTGGGCACTGATAGCGAGGCTTTTTCCTGGTCGAACTGATAACGCTGTGAAGAATCACTGGCATGTTATTATGGCACGAAAGCAAAGAGAGCAATCCAAGCAGTTAAGTGGCAAGAGAGTCTTCCAAGATGTTTACAATGATTCTTCCAGTGACACTTTCTCTTCTACTAAAAGATCGAAATCGCAAGATATCTTTGGTTCCCAAACGCTCTTTGACTTCCGGAACATCGATAAGAGTAGAATCATTGCAGAATATTCTCCCTCCATCTCTTTGGCTTCTTGGAATTTCGCATCCATGGCGAAACAAGGGAAAGATAATAATTACTTCAACCCCTGCTTTAACATCTACTTCTCAGAATGTTCAAAAGGGTCGGATAGTTATCTTTACAGAATTTATCCAAATTCCGCATCATCACACGGCAGCATTCTACAAAACTACCGGAAGGTTGTTCCAGGTCGTTGCAGATCAGTCTTAGGTTGTGATGGTGATGATGAGAAACATAGGACAATAAATAATAGGGACTTGACGAATCTATGCGATATCTCACCCACATTCGCAAAGGAGAGAGCTTCTCCGGAACAAGAGCAAGCAGATGATCTCAAAGAAGTTCCCTTCATTGATTTTCTGGGCGTGGGTGTGTCATCGTCGTGA 939 0.4452 MEDSDLVAIASSTGDQDSKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKQLSGKRVFQDVYNDSSSDTFSSTKRSKSQDIFGSQTLFDFRNIDKSRIIAEYSPSISLASWNFASMAKQGKDNNYFNPCFNIYFSECSKGSDSYLYRIYPNSASSHGSILQNYRKVVPGRCRSVLGCDGDDEKHRTINNRDLTNLCDISPTFAKERASPEQEQADDLKEVPFIDFLGVGVSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2197g00001 312 CDD SANT 26 67 IPR001005 -
Pral2197g00001 312 SMART sant 22 71 IPR001005 -
Pral2197g00001 312 SMART sant 74 122 IPR001005 -
Pral2197g00001 312 Pfam Myb-like DNA-binding domain 26 86 - -
Pral2197g00001 312 Gene3D - 77 136 - -
Pral2197g00001 312 FunFam MYB transcription factor 23 74 - -
Pral2197g00001 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pral2197g00001 312 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pral2197g00001 312 Gene3D - 23 74 - -
Pral2197g00001 312 MobiDBLite consensus disorder prediction 1 26 - -
Pral2197g00001 312 CDD SANT 77 117 IPR001005 -
Pral2197g00001 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Pral2197g00001 312 FunFam MYB transcription factor 76 147 - -
Pral2197g00001 312 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Pral2197g00001 312 PANTHER MYB PROTEIN-RELATED 23 147 - -
Pral2197g00001 312 SUPERFAMILY Homeodomain-like 21 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2197g00001 Pral-Chr2197 2772 4368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2197g00001 21 129 MYB Transcription Factor Family AT1G17950 84.404 4.97e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2197g00001 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2197g00001 K09422 - gmx:100817328 344.354