Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2194g00006 ATGGATGGGAGGCGGCATTCAGTTGATGTTCCTATTTCGAAAACTCTTGTAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCTACGAATTCTATGAGCAAACTCTGTTCTTCGATTGATAATCTGCACTGGGAAAACAGTTCGGGCAATGGGATTTCTCTGCGGTTCTTGGACGCTTCTCGCGCTTGTGATTCTGATGATAATGGTGCATTAAGGTCGAAGAATTTGAGTTGTAGCATGCGCAGAGAGCACGATGCTGCTGATTTTGAATTGAACTGTGGCCATTTCAACTCTAAACTGAAGTCTTGTCCTGAAGGCCAGCAGGATGAAGAACTAGCTTACTCTAATTTGAATCAGGAAGTCAATTCCGGTATTAAGTCGACAAGTGATGGCTGCTATAGCAACCATAGACGTAAGGAATTAGATATAGCATCTGTTATTCCTCCCAGCAACGAGGCAACTTCTGGGTCATCAAAGTTAGGGACAATTGATCATTCTATGTTGACTAGAAAAACTCTAGGCAAGAATCAAGTGAAATCATCCGAAGTTTTGGGCGATATTGCAGGTCTTGGGGGTAGTCCATGCCTTTCAGTCGGTGAAGCCTTCTCAGCTTATAGTTCTTCGACGAACATGAATCAAGATGTAGATATTGGAGATGATAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCGCCAAGGTTTAGAGAATCAAATGTATATTCTGATATAGAAGACCGTCCTCTGATATCCTGGCACACAGATGAGACGGCTCTTTATGGACATAAAAACATGAGACACATTGGCGGTGAAATCAGTCCAAATTTTGAAACTCCAAGAAGTTTATGTATGAAATTTAGGCCAAAATCTTTTAGTGATTTGGTTGGGCAAAATGTGGTAGCGAGGTCTCTTTTGGGCGCCATCTTTAAGGGAAGGGTAACCTCATTCTATCTCTTCCATGGTCCTCGTGGTACTGGCAAGACATCTGCGTCCAGGATTTTTGCTGCTGCCCTGAATTGTCTCTCCCTCGAGGAGGAAAGGCCATGTGGTCTTTGCAGAGAGTGCGTTTTGTTCTTTTCTGGTAGAAGTAAAGATGTTAAAGAAGTTGATTCTGTGAAACTTAATCGTATTGACAAGATAAAATCCCTTGTTAAAAATGCAAGCATCCCTCCAGTTTCTTCACGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCACGGGGGAGGCATGGGCAAGTCTTTTGAATAGCCTAGAGAGCCTTTCTCAGCATGTGGTCCTTATTATGATCACTCCAGATCTGGACAAACTTCCCCGAAGTACAGTTTCCAGGGCCCAGAGGTATCACTTCCCTAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGCATAGAAGAAGGTCTTGACTTTGAACAGGAGGCTTTGGGCTTCATCTCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATCATGCTTGATCAGCTGAGCTTGCTTGGTAAAAAAATCACAATTTCCTTAGCCCATGAACTTACTGGTATCATCTCTGACGACGAATTGCTTGAATTACTGGATCTGGCTCTGTCTTCCGACACTTCAAATACAGTTAAAAGAGCGCGAGAGTTAATGAGATCAAGAGTGGACCCTTTACAACTTATATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGATGATAGCGGGTCTGAAATCAGAATGAGGTTTTCCAATAGACGCAAATCTGAAGCTGACCTTCAAAAACTAAATCATGCGTTGAGAATACTTTCTGAAACGGAGAAGCAATTACGGATTTCCAAGAATCAAACAACATGGTTCACGGTAGCTCTTCTGCAGTTAAGCTCTGCAGAACATTCTTCTGTCGAAGCAAGTGATACGAAATTGAGATATGCATGCAATGGAGATGGTGATTTCTGCAGTACATCATCTACAGGGGATAGCCGGAAGCATCCTGCCTCTGCTCAGTATGATAACAAGTTGTTTAGATTAGGACAACAGGATCACGCATTAAGTTCCATATGGCATAAAGCGACAGAGTCATGTCAATCTAACAGACTCAAGACTTTTCTTAGGAAACAGGGGAAGTTGTCTTCTCTGTGTGTTGATCGCGGTCTAGCAATTGCTGAATTGGATTTCCAGCATCGCAACTACGTATATAGGGCTGAGAAGTCGTGGAAAATGATTGCCAGTTCCCTGCAGCTCATACTGGGTTGTAACATAGAGCTCAGGATCAATCATGTACCTTGCACTTCTGATTCTACATATGCCAAGTTGAAGAGGTCATCTTTCAGTTTTTTCACTTGTTCCCGTAGAATTCATCGAAAGGCGCTCTCAGATAATGAACAAGGAAGTGAACCAGACTACACTGATCACACCTCGCAGAAAGCCATGATGAAGGATAGAACTTGTAAATCTGATTGTGGATCTCAGATGCAACAACCTGACTCTTATCATGGAATGGAGGTAGTAACAGCATTGAGAGATGGTGAAGGAAATTTGCTGAGCTCAAGGAAGAATTTGTTGAATAGTTCATGTCAAGAGACTTCAAGGACCTCAAGTTCTGGTGTTGATTCCTCCAAGGAAGAGGGATTTGATTATGCACACCTAGTTTCATCAAACCCTGATTCAGACTATCAATCAAAATGTTTCCCTCGAACTTTCTGGATTCATAAGAAGAAGTTACATTCTCCAGATCTATCTCAGTTGGTATTCGAGGGCACTCAACAACAGAAAGAATTTGTTTTATCCATCCCAAATTACACCTGTTCTGAGACGTATAGCTATGCTAGTGAACCATGTGTTTTCTCCACCAGCTCTAACAACTGTACCAAAGCCGCCCAAAATGAGAAGAGAAATTCCAAATTATAG 2919 0.4203 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGALRSKNLSCSMRREHDAADFELNCGHFNSKLKSCPEGQQDEELAYSNLNQEVNSGIKSTSDGCYSNHRRKELDIASVIPPSNEATSGSSKLGTIDHSMLTRKTLGKNQVKSSEVLGDIAGLGGSPCLSVGEAFSAYSSSTNMNQDVDIGDDNHHGCGISCCWSKSPRFRESNVYSDIEDRPLISWHTDETALYGHKNMRHIGGEISPNFETPRSLCMKFRPKSFSDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEEERPCGLCRECVLFFSGRSKDVKEVDSVKLNRIDKIKSLVKNASIPPVSSRFKIFIVDECQLITGEAWASLLNSLESLSQHVVLIMITPDLDKLPRSTVSRAQRYHFPKIKDADIASRLEKICIEEGLDFEQEALGFISAKSCGSLRDAEIMLDQLSLLGKKITISLAHELTGIISDDELLELLDLALSSDTSNTVKRARELMRSRVDPLQLISQLANLIMDILAGKCDDSGSEIRMRFSNRRKSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEHSSVEASDTKLRYACNGDGDFCSTSSTGDSRKHPASAQYDNKLFRLGQQDHALSSIWHKATESCQSNRLKTFLRKQGKLSSLCVDRGLAIAELDFQHRNYVYRAEKSWKMIASSLQLILGCNIELRINHVPCTSDSTYAKLKRSSFSFFTCSRRIHRKALSDNEQGSEPDYTDHTSQKAMMKDRTCKSDCGSQMQQPDSYHGMEVVTALRDGEGNLLSSRKNLLNSSCQETSRTSSSGVDSSKEEGFDYAHLVSSNPDSDYQSKCFPRTFWIHKKKLHSPDLSQLVFEGTQQQKEFVLSIPNYTCSETYSYASEPCVFSTSSNNCTKAAQNEKRNSKL 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2194g00006 972 SMART AAA_5 316 476 IPR003593 GO:0016887
Pral2194g00006 972 Gene3D - 521 633 - -
Pral2194g00006 972 MobiDBLite consensus disorder prediction 794 816 - -
Pral2194g00006 972 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 286 690 - -
Pral2194g00006 972 Pfam DNA polymerase III, delta subunit 300 457 - -
Pral2194g00006 972 Coils Coil 589 609 - -
Pral2194g00006 972 Gene3D - 278 455 IPR027417 -
Pral2194g00006 972 FunFam Protein STICHEL-like 1 isoform C 521 634 - -
Pral2194g00006 972 FunFam DNA polymerase III subunit gamma/tau 458 520 - -
Pral2194g00006 972 CDD HLD_clamp_pol_III_gamma_tau 457 520 IPR045085 -
Pral2194g00006 972 NCBIfam DNA polymerase III subunit gamma/tau 284 630 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pral2194g00006 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 506 IPR027417 -
Pral2194g00006 972 SUPERFAMILY post-AAA+ oligomerization domain-like 521 632 IPR008921 GO:0003677|GO:0006260
Pral2194g00006 972 Gene3D - 458 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2194g00006 Pral-Chr2194 36002 39804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2194g00006 275 569 Core DNA Replication Machinery Family AT1G21690 25.084 1.56e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2194g00006 - - pcin:129308301 1681.38