Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2190g00001 AATTGTAGAAGCAGTAGACGATTCCTTCGGGTTACGATATGGCGGGCCGCAAAACCCCAGAGGACTCCTCAAGAAGTTGAGGATATAATTCTCAGGAAAATTTTTCTCGTTTCCCTCACTGATGCCACGGGAAACGATCCTAGAGTCGTTTACTTGGAATTGACAGCAGCTGAGATTCTCAGCGAGGGCAACGAATTGAGGCTTTCACGGGACTTGATGGAACGGGTTCTGATTGATCGGCTTTCTGGAAGTTTCTCTTCTGCTGAATCGCCTTTTCAGTACTTAATCAGTTGCTGTCAACGAGCGCACGATGAGGGTAAAATTGCAAACATGAAAGATAAAAGTTTGAGGAGTGAGATGGAATCCGTGGTGAAACAAGCAAAGAAGCTGTGTGTAGCATATTGTAGAATTCATTTGGCGAATCCTGACATGTTTCAAAGTGGAAATTCTAGTGCGAGTAAACATCAGAACTCGCCATTGTTACCACTCATTCTCTCTGAGGTCGGTGGCACCATCAGTGGCTTTGGTGGGAGTGGCAATGCTGGCGGAGTTAAAAGCCCGCCTGGGTTTCTGGAGGAATTTTTCAGGGACTCAGACTCTGATAGTTTGGATCCAATATTGAAAGGGTTGTATGAGGAGTTGAGGGGTAGTGTGATGAAAGTTTCAGCTCTTGGGAATTTCCAAGACTCTTTGAGGGCATTGCTGTACCTGGTTAGATTTCCCATTGGTGCAAAGTCTCTTGTAAGCCACAATTGGTGGATTCCTAAAGGAGTTTACATGAATGGACGTGCAATTGAAATGACAAGTATTTTAGGCCCTTTCTTTCATGTTAGCGCTCTTCCTGATCACGACTTTTTCAAGAGTCAGCCAGACGTTGGGCAGCAATGCTTTTCGGATGCATCTACTCGCCGTCCACCTGATTTGCTATCTTCATTCACCACGATTAAAACTGTCATGAATAACTTATATGATGGCCTGAGTGAGGTTCTCCTCATTCTTCTGAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTTCTGAGGTAATCAATAAGAACGCATCCAGGGCTCATATACAGGTTGACCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCGTCTCTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAGATTGATGCAAAATATGTCTACTATTCAAACCGTCTGGATTTAAGAGGCTTGACTGCCCTTCATGCATCTTCTGAGGAAGTTGCTGAATGGCTAAAGAGTAATGATGGCGAGAAACGTCTGCAGCAATCTCAGGAAGCAACAAGTTCTGGTAGTAACAATGCTGGTGATCTTGCAAATGCAAAGCCTGTATCACATGCTGAAAAGACAAAATACCCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTTCTCAACTTAGGCCTCTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATCTTTCTAGGTGTGAAGATTCTCTTTTAACACTCAAAGACACGCAGGCACAGTCACCATCTCCTCAGTTGGATTTAGATATAGCTCGACTTGAAAAACAAATAGAGGAGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTGCGGGATAACACATTTATTCAAAATGCTCTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTTGGGGGATTCAAGATGCCTCTACCATCAACTTGCCCAATGGTATTTGCTTCGATGCCCGAGCATTTTGTAGAAGATGCAATGGAATTGCTCATATTTGCTTCTCGAATTCCAAAAGCCTTAGATGGGGTTGTGCTGGATGAATTCATGAACTTCATTATTATGTTCATGGCCAGTCCTGAATTTATCAAAAATCCATATTTGAGGGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCGCGTAGGAGTGGGTCATCTGCTACAGCCACTCTATTTGAAGGGCACCAGCTGTCTCTTGAGTACCTTGTGAGGAATCTTTTGAAGCTTTACGTTGACATTGAGTTTACTGGTTCTCACACTCAGTTTTATGACAAGTTTAATATCCGCCATAATATTGCCGAACTGCTAGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCCTGGAGACAGATTGCTAAAGAAGAGGAAAAGGGCGTCTATCTAAATTTCTTAAACTTCTTGATCAATGATAGTATTTATCTTCTAGATGAAAGTTTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCAAATACCAGTGAATGGGAGCGTCGACCAGCTCAAGAAAGGCAGGAGAGGACCCGGCTATTCCACTCACAAGAAAATATTATTAGAATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCGTTTACTTCAGAGCAGATTACTGCTCCTTTCCTTCTTCCTGAGATGGTTGAAAGAGTGGCCAGCATGCTCAATTACTTTCTTCTGCAATTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAGTATGAATTCCGTCCCAAGCATTTGCTTAAGCAGATTGTGCACATTTATGTTCATCTAGCCAGAGGTGATACCAACAACATCTTCCCATCTGCCATCTCCAAGGATGGTCGATCATACAATGATCAGCTGTTTAGTGCTGCAGCAGATGTCCTTCGGAGAATAGGTGAGGATGGAAGAGTTATACATGAATTTGTTGAACTCGGTGCTAAAGCAAAAGTGGCTGCTTCGGAGGCCATGGATGCTGAAGCTGCTTTAGGGGAAATACCAGATGAATTCCTTGATCCGATTCAGTACACTCTGATGAAAGATCCGGTTATCTTACCTTCTTCAAGGATCACAGTTGATCGTCCTGTCATCCAGAGGCATCTTCTGAGTGATAGCACTGACCCATTCAATCGTTCTCACCTCACTGTCGATATGCTGATTCCTGATGATGAACTGAAGGCCAGAATTGAGGAGTTTGTGAGGTCCCAGGGATTGAAGAAACATGATAAAGGCCAAAGTATGCAGAGTAGCAAGGCCGCAATTCAGACCACGAATGAGGAAATGTTGATTGATTAG 3120 0.4253 NCRSSRRFLRVTIWRAAKPQRTPQEVEDIILRKIFLVSLTDATGNDPRVVYLELTAAEILSEGNELRLSRDLMERVLIDRLSGSFSSAESPFQYLISCCQRAHDEGKKXANMKDKSLRSEMESVVKQAKKLCVAYCRIHLANPDMFQSGNSSASKHQNSPLLPLILSEVGGTISGFGGSGNAGGVKSPPGFLEEFFRDSDSDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPIGAKSLVSHNWWIPKGVYMNGRAIEMTSILGPFFHVSALPDHDFFKSQPDVGQQCFSDASTRRPPDLLSSFTTIKTVMNNLYDGLSEVLLILLKSTDTRENVLEYLSEVINKNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVYYSNRLDLRGLTALHASSEEVAEWLKSNDGEKRLQQSQEATSSGSNNAGDLANAKPVSHAEKTKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDLSRCEDSLLTLKDTQAQSPSPQLDLDIARLEKQIEEYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMVFASMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTSEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNNIFPSAISKDGRSYNDQLFSAAADVLRRIGEDGRVIHEFVELGAKAKVAASEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPDDELKARIEEFVRSQGLKKHDKGQSMQSSKAAIQTTNEEMLID 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2190g00001 1040 ProSiteProfiles U-box domain profile. 941 1015 IPR003613 GO:0004842|GO:0016567
Pral2190g00001 1040 MobiDBLite consensus disorder prediction 436 459 - -
Pral2190g00001 1040 MobiDBLite consensus disorder prediction 438 456 - -
Pral2190g00001 1040 FunFam Ubiquitin conjugation factor e4 a 941 1019 - -
Pral2190g00001 1040 Coils Coil 520 547 - -
Pral2190g00001 1040 PANTHER UBIQUITINATION FACTOR E4 17 1018 IPR045132 GO:0000151|GO:0030433|GO:0034450
Pral2190g00001 1040 Pfam U-box domain 942 1011 IPR003613 GO:0004842|GO:0016567
Pral2190g00001 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 941 1020 IPR013083 -
Pral2190g00001 1040 SMART Ubox_2 945 1008 IPR003613 GO:0004842|GO:0016567
Pral2190g00001 1040 Pfam Ubiquitin elongating factor core 272 925 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Pral2190g00001 1040 SUPERFAMILY RING/U-box 934 1014 - -
Pral2190g00001 1040 CDD RING-Ubox_UBE4A 944 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2190g00001 Pral-Chr2190 6403 14313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2190g00001 16 1040 U-box Gene Family AT5G15400 76.145 0.0 1619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2190g00001 K10597 - gmx:100811444 1720.67